Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq947 129 5e-25 seq584 102 7e-17 seq583 96.9 3e-15 seq186 89.7 4e-13 >seq947 Length=48402 Score = 129 bits (142), Expect = 5e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 31733 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 31674 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| ||| | || || | ||||||||| || Sbjct 31673 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 31614 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || || |||| Sbjct 31613 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACC 31554 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174 |||| || |||||||||||||| | || || ||||| || |||| Sbjct 31553 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| || |||||||| || ||||| || || |||||||| | | ||| Sbjct 33932 AGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGACCATCC 33873 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||||||| |||| || | ||||||||| ||| | ||| |||||||| Sbjct 33872 TCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 33813 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || || | |||| || | || |||||| Sbjct 33812 TGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTGATGGTC 33753 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| || ||||| Sbjct 33752 TTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 120 bits (132), Expect = 3e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 33489 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 33430 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || ||||| ||||| ||| | || || | ||||||||| || Sbjct 33429 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 33370 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | | | ||| || || |||| Sbjct 33369 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 33310 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174 |||| || |||||||||||||| || || || ||||| || |||| Sbjct 33309 TCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 31215 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 31156 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| |||||||| ||||||| | ||||||||| ||| Sbjct 31155 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGG 31096 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 31095 ATGCCCTCCTTGTC 31082 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 32985 CCACCGCGCAGGCGCAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 32926 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||||||| | || || | ||||||||| ||| Sbjct 32925 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGGGGG 32866 Query 21069 ACGCCT 21074 | |||| Sbjct 32865 ATGCCT 32860 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || |||||||| || ||||| ||||| ||| Sbjct 32266 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 32207 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 32206 AGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 32147 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || || | |||| Sbjct 32146 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACC 32087 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || | || || ||||| || || || Sbjct 32086 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 >seq584 Length=13061 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 515 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 574 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 575 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 634 Query 21069 ACGCCT 21074 | |||| Sbjct 635 ATGCCT 640 >seq583 Length=2907 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||||||||||| || ||||| ||||| ||| Sbjct 2724 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2783 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| ||||| || | || || | ||||||||| ||| Sbjct 2784 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 2843 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 ||| ||||| || |||||| Sbjct 2844 GTGCCCTCCTTATCCTGGATCTT 2866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | |||| ||||||||||| || ||||| ||||| ||| Sbjct 2054 CCGCCGCGCAGGCGCAGCACTAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2113 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||| ||| | || || | ||||||||| ||| Sbjct 2114 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 2173 Query 21069 ACGCCT 21074 | |||| Sbjct 2174 ATGCCT 2179 >seq186 Length=14886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| |||||||| || ||||||||||||| |||||| Sbjct 7192 GTCGACTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGCTGCTTGCCC 7251 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| | | || | ||||| ||| || | |||||||||||| Sbjct 7252 GCAAATAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTC 7295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422240410917116