Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq947 149 6e-31 seq583 136 4e-27 seq584 123 3e-23 seq1200 122 9e-23 seq186 107 2e-18 >seq947 Length=48402 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || || || || || || || ||||| |||||||| | || || || || | | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | | |||| || || | ||||| ||||||||||| | ||||||| Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| || ||||| |||||||| |||| ||||||||| ||||||||||| Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | || |||||||| ||| ||||| || | || ||| Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 31734 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || || | ||||||||| |||||||| Sbjct 31082 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTTATTTTCGCGGGCAAGCAGCTGGAG 31141 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| |||||||||||||||||||||| |||| ||||| | ||| || Sbjct 31142 GACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 31201 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | || ||| Sbjct 31202 CGCCTGCGTGGTGGC 31216 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || || || || || || || ||||| || ||||| | || || || | | Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||||||| | |||||| Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||||| || || ||| ||||| || | || ||| Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGCCTGCGCGGTGGC 32267 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || || || || || | || ||||| |||||||| | || || || || | | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | |||| || |||| ||||| ||||||||||| | ||||||| Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGC 33383 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| || ||||| ||||| || || | |||||||| ||||||||||| Sbjct 33384 AGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAACA 33443 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | || |||||||| ||| ||||| || | || ||| Sbjct 33444 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 33490 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || || || | | Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||| ||| | |||||| Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | |||||||| |||||||| || | |||||||| || |||||| Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 |||||||||||| | || |||||||| ||| |||||||| | || ||| ||| Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCTTGCGCGGTGGCTGCT 33952 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| |||||||| |||||||| || | ||| Sbjct 32861 GGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 32920 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | || |||||| | ||| ||||| || | Sbjct 32921 ACCCTGGCCGACTACAACATCCAGAAGGAGTCAACCCTGCATTTGGTGCTGCGCCTGCGC 32980 Query 40912 GGCGGC 40917 || ||| Sbjct 32981 GGTGGC 32986 >seq583 Length=2907 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||||| ||| | |||||||| || || |||| ||| ||||| |||||||| Sbjct 2857 GATAAGGAGGGCACTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAG 2798 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| |||||||||||||||||||||| |||||||||| || ||| || Sbjct 2797 GACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTG 2738 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 2737 CGCCTGCGCGGCGGC 2723 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 2178 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 2119 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||| ||||| |||||| ||||| || | Sbjct 2118 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACACTGCACCTAGTGCTGCGCCTGCGC 2059 Query 40912 GGCGGC 40917 |||||| Sbjct 2058 GGCGGC 2053 >seq584 Length=13061 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 639 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 580 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| || ||| ||||| || | Sbjct 579 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 520 Query 40912 GGCGGC 40917 |||||| Sbjct 519 GGCGGC 514 >seq1200 Length=20974 Score = 122 bits (134), Expect = 9e-23 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 |||||||| | |||| || ||||||||||| |||||| | ||||| |||||||| |||| Sbjct 5179 GCAGTTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCGGGCCTGACCTTCA 5238 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 ||||||||||||||||| | || ||||| || || |||||||||||| ||||| Sbjct 5239 GCAACGAGCTCATCTCCCGTGATGAGGGCCTCCACACCGACTTTGCCTGCTTGCT 5293 Score = 104 bits (114), Expect = 2e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 116681 GAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCG 116739 |||||||| |||||| || ||| | ||||||||| |||| ||||||| |||| Sbjct 3823 GAGGAGGTTGACCTGGGCAGCGACGTGCAGGACTGGGAGACGCT-GAACGACGGCGAGAA 3881 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 || |||||| ||||||||||||||| || || || ||||||||||| ||||| Sbjct 3882 GCACTTCATCTCGCACGTGCTGGCCTTCTTTGCGGCGTCTGACGGCATCGTGCTGGAGAA 3941 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 |||| || ||| ||| ||||||||||||| |||||| |||| Sbjct 3942 CCTGGGCGTGCGGTTCATGAAGGAGGTGCAGGTCCCCGAGGTGCGG 3987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 116838 AGGCGCGGNNCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATT 116897 |||| || |||||||||||| ||||| ||||| |||||| | ||||| || ||||| | Sbjct 4460 AGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCCGAGATGTACT 4519 Query 116898 CGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | || | || ||||| | | |||| | ||| |||| ||| | || ||| Sbjct 4520 CCCTGCTGCTGGAGTCGTACATCAAGGACTCTGCCGAGAAGAA---CCGCCTCTTCCACG 4576 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 ||| ||||||| |||| |||||| ||||||| || |||||||| |||||| || Sbjct 4577 CCACCGAGACGGTGCCAGTCGTCAAGAAGAAGGCGGACTGGGCGCTCAAGTGGATCACC 4635 >seq186 Length=14886 Score = 107 bits (118), Expect = 2e-18 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||| ||||| |||||||| Sbjct 4559 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAG 4500 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 |||| ||| ||||| |||||||||||||||||||| Sbjct 4499 GACGGGCGTACCCTGGCCGACTACAACATCCAGAAGG 4463 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC-- 40749 ||| ||||| | || || ||| ||| | || ||||| | ||||| || || | Sbjct 7389 GCAGATATTTTTCAAGACCGTCAGCGGCGAGACAATCACTATTGACGTGGAGTCCTCTTC 7330 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||||| | | | |||| || |||| ||||| || |||||||| ||| | Sbjct 7329 TGACAGCGTTGAGAGCGTGAAGGCCAAGATTCAGGACAAGGAAGGCATCCCGCACGACGA 7270 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || | | |||||||| |||||||| |||| || |||||| ||||||||| Sbjct 7269 GCAGCGCCTACTATTTGCGGGCAAGCAGCTGGAGGACGGGCACACCCTGGCCGACTACAA 7210 Query 40869 CATCCAGAAGGAGGCCACGCT 40889 ||| || |||||| | ||||| Sbjct 7209 CATACACAAGGAGTCGACGCT 7189 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| || | |||||||| || || || || | | |||| |||||||| |||| || Sbjct 6520 GGCATGCCACCCGACCAGCAGCGCCTGATATATGTGAGCAAGCAGCTGGAGGACGGCCGT 6461 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||||||||||||||||||| || |||||| || || Sbjct 6460 ACCCTAGCCGACTACAACATCCAGAAGGAGTTCATGCTGCACCTGGT 6414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195686683760