Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq947 87.8 2e-12 seq584 84.2 2e-11 >seq947 Length=48402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| || || || ||||| ||||| ||||| || ||||| | || || || | || | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| |||| | || || | || ||||||||| ||| | ||||| ||||||| Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACA 31373 |||| || || || || ||||| ||| |||| ||| || || ||| || |||| Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 31374 TTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | || || || || || || |||||||| || Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCT 31718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| |||| ||||| || ||||| | || || || | || Sbjct 33720 CATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTC 33779 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 33780 AGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 33839 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| || | || || ||||| || Sbjct 33840 GCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAA 33899 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || |||||||| || Sbjct 33900 CATCCAGAAGGAGTCTACCCTGCATCTGGTGCT 33932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| ||||| || ||||| |||| ||||| || ||||| | || || || | || | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| | | || | || || | || ||||||||| ||| | ||||| ||||||| Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGC 33383 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACA 31373 |||| || || || || ||||| ||| | ||||| || || ||| || |||| Sbjct 33384 AGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAACA 33443 Query 31374 TTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | || || || || || || |||||||| || Sbjct 33444 TCCAGAAGGAGTCTACCCTGCATCTGGTGCT 33474 >seq584 Length=13061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| ||||| || ||||| ||||| ||||| || || || | || || || |||| | Sbjct 155 TGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTGGAGGTGGAGTCGTCAG 96 Query 31254 ACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || || ||| | ||||||||| ||| | || || |||||| Sbjct 95 ACACCATTGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAGGGCATCCCCCCTGACCAG 37 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| |||| || Sbjct 36 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746056335920