Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq947 93.3 4e-14 >seq947 Length=48402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||| || |||| | ||| || ||||| || || Sbjct 31703 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCCTCCAGCTGCTTGCCG 31644 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| || ||||| || || || ||||| || ||||| ||| || || Sbjct 31643 GCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTC 31584 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||| | || | ||||||||||||| || Sbjct 31583 ACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTC 31524 Query 139748 TTTACGAATATTTGCA 139763 || || || || |||| Sbjct 31523 TTCACAAAGATCTGCA 31508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||| || |||| ||||| ||||| || || Sbjct 33459 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCTAGCTGCTTGCCG 33400 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| || ||||| || || || ||||| || ||||| ||| | || | || Sbjct 33399 GCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTT 33341 Query 139688 AGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | || ||||||||| | || | |||||||||||||| || Sbjct 33340 CACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCGGTCAAGGT 33281 Query 139747 TTTTACGAATATTTGCA 139763 || || || || |||| Sbjct 33280 CTTCACAAAAATCTGCA 33264 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || || |||| || | || | |||||||| || || ||||| ||||| Sbjct 33948 GCCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 33889 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || || ||| | ||||| || ||||| || || || Sbjct 33888 CAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGG 33829 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 33828 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCAC 33769 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| ||||| || || || || || ||||| Sbjct 33768 CTCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496041360879200