Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2309 102 1e-17 seq1613 98.7 2e-16 seq2325 96.9 5e-16 seq1622 96.9 5e-16 seq1610 96.9 5e-16 seq1608 93.3 7e-15 seq2319 89.7 8e-14 seq2318 87.8 3e-13 seq2323 84.2 3e-12 >seq2309 Length=18039 Score = 102 bits (112), Expect = 1e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| ||||| || |||||||| || Sbjct 14817 CAGGGCATCACCAAGCCTGCTATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGCATC 14758 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | |||| || |||| ||| | || | ||| | ||||| ||| ||| | Sbjct 14757 AGCGGCCTCATCTACGAGGAGACTCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 14698 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | || || | ||| || |||||||| ||||||||||||||| || | ||| | Sbjct 14697 CGCGACGCAGTGACCTACACTGAGCACGCCCGCCGTAAGACTGTCACCGCCTTTGATGTG 14638 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| || | || || || ||||| | | || || ||||| Sbjct 14637 GTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 14594 >seq1613 Length=24984 Score = 98.7 bits (108), Expect = 2e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 11140 CAGGGCATCACCAAGCCTGCTATCCGCCGCCTGGCTCGCCGTGGTGGTGTCAAGCGCATC 11199 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | | ||||| |||| || | ||| | ||| | ||||| ||||||| | Sbjct 11200 AGCGGCCTCATTTATGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTTGAGACCGTGGTG 11259 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||| | ||| || |||||||| || ||||| || ||| || | || | Sbjct 11260 CGCGATGCAGTGACCTACACTGAGCACGCCCGCCGCAAGACCGTGACCGCCTTTGACGTG 11319 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| || | || || || ||||| | | || || ||||| Sbjct 11320 GTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 11363 >seq2325 Length=13960 Score = 96.9 bits (106), Expect = 5e-16 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 2294 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGTGGTGTCAAGCGCATC 2235 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | |||| || |||| || | ||| | ||| ||||||| ||| ||| | Sbjct 2234 AGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTTGAGAACGTGGTA 2175 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||| | ||| || |||||||| || ||||| || ||| || | || | Sbjct 2174 CGCGATGCCGTGACCTACACTGAGCACGCCCGCCGCAAGACCGTGACCGCCTTTGACGTG 2115 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| || | || || || ||||| Sbjct 2114 GTCTACGCCCTCAAGCGCCAGGGCCG 2089 >seq1622 Length=24490 Score = 96.9 bits (106), Expect = 5e-16 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 17231 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGTGGTGTCAAGCGCATC 17290 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | ||||||| |||| || | ||| | ||| | ||||| ||| ||| | Sbjct 17291 AGCGGCCTCATCTATGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 17350 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | || || | ||| || |||||||| || ||||| || ||| || | ||| | Sbjct 17351 CGCGACGCCGTGACCTACACTGAGCACGCCCGCCGCAAGACCGTGACCGCCTTTGATGTG 17410 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| || | || || || ||||| Sbjct 17411 GTCTACGCCCTCAAGCGCCAGGGCCG 17436 >seq1610 Length=71910 Score = 96.9 bits (106), Expect = 5e-16 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| ||||| || |||||||| || Sbjct 34707 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGCATC 34648 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | ||||||| |||| || | ||| | ||| | ||||| ||| ||| | Sbjct 34647 AGCGGCCTCATCTATGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 34588 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||| | ||| || |||||||| || ||||| || ||| || | || | Sbjct 34587 CGCGATGCCGTGACCTACACTGAGCACGCCCGCCGCAAGACCGTGACCGCCTTTGACGTG 34528 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| ||| | || || || ||||| Sbjct 34527 GTCTACGCACTCAAGCGCCAGGGCCG 34502 Score = 93.3 bits (102), Expect = 7e-15 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 6453 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGTGGTGTCAAGCGCATC 6512 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | |||| || |||| || | ||| | ||| | ||||| ||| ||| | Sbjct 6513 AGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 6572 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||| | ||| || |||||||| || ||||| || ||| || | || | Sbjct 6573 CGCGATGCCGTGACCTACACTGAGCACGCCCGTCGCAAGACCGTGACCGCCTTTGACGTG 6632 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| || | || || || ||||| | | || || ||||| Sbjct 6633 GTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 6676 Score = 89.7 bits (98), Expect = 8e-14 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || ||||||| |||||||| |||||||| || Sbjct 58817 CAGGGCATCACCAAGCCTGCTATCCGCCGCTTGGCTCGCCGTGGTGGTGTCAAGCGCATC 58758 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | ||||||| |||| || | ||| | ||| | ||||| ||| ||| | Sbjct 58757 AGCGGCCTCATCTATGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 58698 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||| | ||| || |||||||| || ||||| || ||| | | || | Sbjct 58697 CGCGATGCCGTGACCTACACTGAGCACGCCCGCCGCAAGACCGTGACCGCTTTTGACGTG 58638 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| || | || || || ||||| | | || || ||||| Sbjct 58637 GTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 58594 >seq1608 Length=15520 Score = 93.3 bits (102), Expect = 7e-15 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 7820 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGTGGTGTCAAGCGCATC 7879 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | |||| || |||| || | ||| | ||| | ||||| ||| ||| | Sbjct 7880 AGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 7939 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||||| | ||| || |||||||| || ||||| || ||| || | || | Sbjct 7940 CGCGATGCCGTGACCTACACTGAGCACGCCCGTCGCAAGACCGTGACCGCCTTTGACGTG 7999 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| || | || || || ||||| | | || || ||||| Sbjct 8000 GTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 8043 >seq2319 Length=15543 Score = 89.7 bits (98), Expect = 8e-14 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| ||||| || ||||||||| || Sbjct 9860 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGTATC 9919 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | ||||||| |||| || | || | ||| | ||||| ||| ||| | Sbjct 9920 AGCGGCCTCATCTATGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 9979 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | || || | ||| || ||||||||| || ||||| || || || | || | Sbjct 9980 CGCGACGCCGTGACCTACACTGAGCACGCTCGCCGCAAGACCGTGACTGCCTTTGACGTG 10039 Query 16649 GTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| || | || || || ||||| | | || || ||||| Sbjct 10040 GTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGG 10083 >seq2318 Length=13727 Score = 87.8 bits (96), Expect = 3e-13 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| |||||||| || |||||||| ||||| || |||||||| || Sbjct 10959 CAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGCATC 10900 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || | ||||||| |||| || | || | ||| | ||||| ||| ||| | Sbjct 10899 AGCGGCCTCATCTATGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTG 10840 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | || || | ||| || ||||| || || ||||| || ||| || | ||| | Sbjct 10839 CGCGACGCAGTGACCTACACTGAGCATGCCCGCCGCAAGACCGTGACCGCCTTTGATGTG 10780 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 |||||||| | || || || ||||| Sbjct 10779 GTCTATGCCCTCAAGCGCCAGGGCCG 10754 >seq2323 Length=73350 Score = 84.2 bits (92), Expect = 3e-12 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16466 ATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 || || || ||||||||||| |||||||| || |||||||| ||||| || |||||||| Sbjct 24813 ATGCAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGTGGCGGTGTCAAGCGC 24754 Query 16526 GTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585 || || | ||||||| |||| || | || | ||| | ||||| ||| ||| Sbjct 24753 ATCAGCGGCCTCATCTATGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTG 24694 Query 16586 ATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 | | || || | ||| || |||||||| || ||||| || || || | || Sbjct 24693 GTGCGCGACGCAGTGACCTACACTGAGCACGCCCGCCGCAAGACCGTGACTGCCTTTGAC 24634 Query 16646 ATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| || | ||||| || ||||| Sbjct 24633 GTAGTCTACGCCCTCAAACGCCAGGGCCG 24605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071861865143