Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq3544 679 0.0 seq3157 484 8e-132 seq3158 109 7e-19 >seq3544 Length=2542 Score = 679 bits (752), Expect = 0.0 Identities = 707/925 (76%), Gaps = 2/925 (0%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||| |||| ||||| || ||||| | || | ||||||||||| | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTG-CTTTATTGTTGCTTTCATCGCTGCACC 135492 |||||||||||| | | |||| ||| ||| |||||| ||| ||| || |||||||| Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || ||||| || || || | |||||| || | ||||| || || Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 ||| || |||||||| |||| ||| || || || || || | |||||||| || || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 |||||||||||||| | || || ||| ||||||| ||||||||||| ||| || | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||| || | |||||| | | | |||| |||||||| ||||||||||| |||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| |||||||| ||| ||||| ||||| ||||| || |||||| ||| Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||| ||| | | ||||| | || ||||||||||| |||||||||||| | || || Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 |||||| ||||| || | |||| |||| ||||| |||||||| ||||| || ||||| || Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||||||| | || |||||||| || || |||||||| | || |||||||||||||| Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || | || || ||| |||| | ||||| || ||||| ||||| ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| ||||||||||||||||| ||||||||||| ||||| ||||| || |||||||| Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 |||| | || ||||||||||| || || |||||||||||||| ||||||| || | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 ||||||||||||||| |||| ||||| |||| | || | || || ||||| || || Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 | | || || |||||||||||||| || ||||| ||| ||||||||||| | ||||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACAC 2509 Query 136273 CTGGGCAGATGTGCTGAATCGTGCT 136297 ||||| || | | || |||||| Sbjct 2510 TTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 484 bits (536), Expect = 8e-132 Identities = 617/848 (73%), Gaps = 6/848 (1%) Strand=Plus/Plus Query 137892 CGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTTCCCACTGCTTATTTG 137951 || || ||||||||||| || || |||||||| || ||||||| || ||||||||| | Sbjct 1667 CGTGACCGCTTTGTATTCGTAGGGTGGTCTGGGTTATTACTTTTCCCTACTGCTTATCTT 1726 Query 137952 GCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACACCCACGGGTTG 138011 || |||||| ||| |||| || || || ||||| ||| ||||| || || || || Sbjct 1727 GCAGTTGGTGCATGGTTTACAGGAACTACATTTGTAACATCTTGGTATACTCATGGATTA 1786 Query 138012 GCGTCTAG---TTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTCGACTCCTGCT 138068 | |||| ||| | ||||| ||||| | || || || ||||| || || ||| Sbjct 1787 G---CTAGCTCATATTTAGAAGGTTGCAATTTTTTAACTGCGGCAGTTTCTACACCAGCT 1843 Query 138069 GATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTC 138128 || ||||||||||||| | | | |||||||||||||| | ||||| ||| | Sbjct 1844 AATAGTATGGGTCATTCTTTATTATTCCTTTGGGGTCCTGAAGCACAAGGTGATTTTACT 1903 Query 138129 CGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTG 138188 || |||| ||| | || || || ||| ||||| || || || || | ||| |||| Sbjct 1904 CGTTGGTGTCAATTAGGCGGCCTTTGGGCTTTTACAGCACTTCATGGTTCGTTTGGTCTT 1963 Query 138189 ATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGTCTGGTAGGCATCCGTCCCTACAAC 138248 ||||| || |||||||| || ||||| || | ||| ||| || ||||| || ||| Sbjct 1964 ATTGGTTTTATGCTTCGTCAATTTGAAATTGCACGTTCAGTAAAAATTCGTCCTTATAAC 2023 Query 138249 GCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTG 138308 ||||| || || || | || || ||| | || || || ||| | || || || || Sbjct 2024 GCAATTGCGTTTTCAGCGCCAATTGCTCTTTTTGTTTCTGTTTTCTTAATTTACCCATTA 2083 Query 138309 GGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTG 138368 |||||||| ||||||| ||||| || |||||||| ||||| || ||||| ||| | Sbjct 2084 GGTCAATCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCGATATTCCGTTTCATT 2143 Query 138369 TTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCA 138428 || || | || ||||| ||||||||||| | || || |||||||||||||| || || Sbjct 2144 TTATTTTTCCAAGGTTTTCATAACTGGACATTAAATCCATTTCATATGATGGGTGTTGCT 2203 Query 138429 GGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTG 138488 ||| || | ||||| || || || | ||| ||||||||||| ||||||||||||||| | Sbjct 2204 GGTGTTTTAGGTGGCGCACTTCTTTCTGCAATTCATGGTGCAACAGTAGAAAATACTCTT 2263 Query 138489 TATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAA 138548 | ||||||||| || | |||||||| || ||| | || || |||| ||||||| Sbjct 2264 TTTGAAGATGGAGATGGTGCTAATACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAA 2323 Query 138549 ACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGT 138608 |||||||| | || || || || |||| ||||| ||||| ||||| | |||||| | Sbjct 2324 ACCTATTCTTTTGTAACAGCAAATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCT 2383 Query 138609 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGT 138668 ||||| |||||| | |||||||||||| | || ||||| || | ||||| |||| ||| Sbjct 2384 AATAAACGTTGGTTACACTTCTTTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGT 2443 Query 138669 AGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAA 138728 ||||||| | ||||| | || | || |||| || |||||||||||||| |||||| Sbjct 2444 GCTATTGGTGTAGTTGGTTTAGCATTAAATTTACGTGCATATGATTTCGTATCACAAGAA 2503 Query 138729 ATTCGTGC 138736 |||||||| Sbjct 2504 ATTCGTGC 2511 >seq3158 Length=11629 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 138740 AGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCG 138799 ||||||||||||||| || || ||||| || || || ||||| | ||||| ||| | || Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 138800 TGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATT 138859 ||| ||||||||| || || |||||||| ||||| |||| || ||||| || || || Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 138860 GCCAAGAGGCAACGCTCT 138877 ||| | || |||||||| Sbjct 121 ACCACGTGGAAACGCTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627939341110400