Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3544 645 5e-180 >seq3544 Length=2542 Score = 645 bits (714), Expect = 5e-180 Identities = 677/890 (76%), Gaps = 0/890 (0%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 ||||||||||||||| | ||||| || | | || | ||||| || ||||| | Sbjct 1653 GGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATT 1712 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 | || || || |||||||| || ||||| || || |||||||| |||||| | ||||| Sbjct 1713 GGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCT 1772 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | || ||||||||||| || ||||||| || |||| ||||||| || || ||| Sbjct 1773 TTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGT 1832 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || || |||||||| || | | || || ||| | || || |||||| Sbjct 1833 ATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGT 1892 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| || | | | ||| || | ||||| || | || || ||||| | || Sbjct 1893 CCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAG 1952 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 ||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct 1953 TGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCT 2012 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| | || ||| | ||||||||| || ||||||| ||||||| ||||| || || || Sbjct 2013 GTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGAT 2072 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || ||||| |||||| | |||||||||||||||||| Sbjct 2073 GGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACAT 2132 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 ||||||||||||||||||||||| ||| |||||||| ||| | || ||||| ||||| Sbjct 2133 AACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTA 2192 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 || ||||||||||| ||||| | || || ||||| ||||| |||||||| |||| Sbjct 2193 TTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAAC 2252 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || || ||| ||||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 2253 GAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 2312 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 || || || ||||||||| | | || ||||| ||||| || || |||||| | Sbjct 2313 GCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCA 2372 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 ||||||||||| | || | ||||||||| | ||| | ||||| || || | ||||| Sbjct 2373 TTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATT 2432 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | || |||||||| ||| |||| || ||||||||||||||||||||||| ||| || | Sbjct 2433 TCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAA 2492 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGG 212501 ||| || || ||||||| ||| || ||||| | || |||||||| Sbjct 2493 GGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807518345199560