Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3544 610 8e-170 seq3157 390 1e-103 >seq3544 Length=2542 Score = 610 bits (676), Expect = 8e-170 Identities = 665/881 (75%), Gaps = 4/881 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||| | || |||||| || || | ||| | |||||||||||||| ||| Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 ||||| || | | |||| || || || || ||| | | || || ||||| ||| Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATTGGTTTTATTGCTGCACCT 1730 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || || ||||| || || ||| | || ||||| | |||||||| ||||| ||||||||| Sbjct 1731 CCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAAC 1790 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| ||||||| || || || | |||||||| || || Sbjct 1791 ATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAATT 1850 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || | | ||||| ||||| || ||||| ||||||||||| ||| | || Sbjct 1851 TGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGTT 1910 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | ||| || | || || || | || || |||||| | |||||||||| || | | | Sbjct 1911 TGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCGT 1970 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 |||| ||| | |||||||| |||||| || ||||| |||||| |||| || |||| Sbjct 1971 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCT 2030 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 |||||| || | || || ||||||| ||||| || |||||||||||||| ||||||| Sbjct 2031 GTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTATT 2090 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| ||||| |||||| | || |||||||||||||| ||||| || |||||||| Sbjct 2091 TCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 2150 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT--AGTCTCTTCAGTGCAATGCACG 171263 ||||| ||| ||||| || ||| | || |||||| | | | ||| ||| ||||| | Sbjct 2151 TTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTC--TGCTATGCATG 2208 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| |||| || |||||||| || | || || ||||| ||||| | ||| | Sbjct 2209 GTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTG 2268 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || || ||||| |||||||||||||| || ||||| ||||| ||||| || ||||||| Sbjct 2269 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCG 2328 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 || | ||||| ||||| ||||| || || |||||||||||||||||||||||||| | | Sbjct 2329 GTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAG 2388 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 ||| | ||||| || ||| | ||||| || || | ||||| | || |||||||| | Sbjct 2389 CTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 2448 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCA 171544 || | ||||| ||||||||||||||||||||||||||| || Sbjct 2449 ACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCA 2489 >seq3157 Length=2513 Score = 390 bits (432), Expect = 1e-103 Identities = 622/894 (70%), Gaps = 29/894 (3%) Strand=Plus/Plus Query 171792 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 171851 ||||||||| || |||| |||||| || | || || || |||||| | || |||||| Sbjct 1637 TGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGGTCT 1696 Query 171852 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 171911 || | |||||||| ||| |||||| || ||| | || | ||||| ||||||||| Sbjct 1697 GGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACTACA 1756 Query 171912 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTT 171971 || || || || ||||| || ||||| | || ||||||| | || || || ||| Sbjct 1757 TTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAATTTT 1816 Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 |||||||| ||||| || ||||| | | || |||||||||| | |||| ||||| ||| Sbjct 1817 TTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTTTGG 1876 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 || ||||| |||||||| ||| || || |||| ||||||||| || || ||| ||| Sbjct 1877 GGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCTTTT 1936 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151 |||| | ||||| ||||| || || ||||| |||||| | || ||||| |||||| Sbjct 1937 ACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATTGCA 1996 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211 | || || |||||||| |||||| | || || ||||| ||||| | || Sbjct 1997 CGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTTTT- 2055 Query 172212 ACGAGCATC---TTTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTC 172267 | || |||| |||| || ||||||||||| | ||||||| || |||||| Sbjct 2056 ---TGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 172268 ATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAAC 172327 |||||||| ||||| || || |||| |||||||| | || ||||| || || || Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 172328 TCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGC 172387 | ||||||||||||||||||||||| || ||| | | ||||| ||| | || | ||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 172388 CATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGG 172447 || ||||||||||||||| | || || | | |||||| | || || Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGA------------GATGG 2280 Query 172448 TAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAG 172507 | ||| |||||| | || || | || ||||| | ||||||||| ||| Sbjct 2281 T---------GCTAATACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTC 2331 Query 172508 TATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAG 172567 | | | || || || | || ||||| || || |||||| |||| ||||| || ||| | Sbjct 2332 TTTTGTAACAGCAAATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACG 2391 Query 172568 ATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGG 172627 | ||||||||| ||||||||||||| || || | ||| | |||| |||| || Sbjct 2392 TTGGTTACACTTCTTTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGG 2451 Query 172628 TATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGAT 172681 | | || ||| | ||| | || | | ||||| || || ||||| ||||| || Sbjct 2452 TGTAGTTGGTTTAGCATTAAATTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570242774357640