Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq947 140 3e-28 seq583 100 3e-16 seq2126 95.1 1e-14 seq584 95.1 1e-14 seq186 89.7 5e-13 >seq947 Length=48402 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 31734 GCCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 31675 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 31674 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGG 31615 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || || | |||||| | Sbjct 31614 GATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCAC 31555 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || | || | ||| || ||||| || || || || || ||||||| Sbjct 31554 CTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 33490 GCCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 33431 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || |||||||||||||| || |||| | ||||||||||| || || Sbjct 33430 CAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGG 33371 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | ||| | ||| || | |||||| | Sbjct 33370 GATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCAC 33311 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || | || | ||| || ||||| | || || || |||||||||| Sbjct 33310 CTCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||||||||| |||||||| | ||| | ||| |||||||| || ||||||||||| Sbjct 33949 AGCCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAG 33890 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| ||||| ||||||||||| || | || | ||||||||||| || | Sbjct 33889 CCAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGG 33830 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || || || ||||| ||| || ||| | | ||| | || || | ||||| | Sbjct 33829 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCA 33770 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || | || || || |||||||||||| Sbjct 33769 CCTCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATG 33720 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| || || | ||| |||||||| || |||||||| ||| Sbjct 31216 GCCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 31157 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| |||||| ||||||||||| ||| | || | ||||||||||| || || Sbjct 31156 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGG 31097 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 31096 GATGCCCTCCTTGTC 31082 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||| ||| Sbjct 32267 GCCACCGCGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGC 32208 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 32207 CAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGG 32148 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || || | ||||| | Sbjct 32147 GATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCAC 32088 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | || || || || || || || || || ||||| |||| Sbjct 32087 CTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTATGA 32038 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| ||||| | ||| |||||||| || |||||||| ||| Sbjct 32986 GCCACCGCGCAGGCGCAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 32927 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 32926 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGGGG 32867 Query 131127 GATTCCT 131133 ||| ||| Sbjct 32866 GATGCCT 32860 >seq583 Length=2907 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||||| |||||||||| || | || |||||||| || |||||||| ||| Sbjct 2052 AGCCGCCGCGCAGGCGCAGCACTAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 2111 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || | Sbjct 2112 CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 2171 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 2172 GGATGCCT 2179 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| || |||||||| ||| Sbjct 2723 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 2782 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2783 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGG 2842 >seq2126 Length=41412 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146303 ATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTC 146362 |||| || ||| |||||||| ||| ||| | | ||| || ||||| |||| ||| Sbjct 16635 ATGCAGACCAGGAAGCACGAAGACAGCTGGGGCCGCGGGGTGCCCGCGTTAAACAGCGTG 16576 Query 146363 GGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGA 146422 ||||| ||||| || ||| ||||||| | | || || ||||| || | | Sbjct 16575 GGGCTGGCGTGTGTGAACCAGCGCTGGCTCATGAGGTGGTAGGTCTCGATGGCAGAGTCA 16516 Query 146423 ATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCC 146482 ||||| || |||||||| | ||| ||||||||||||||||| || ||||||||| || Sbjct 16515 ATGTCCTCCTTGTGAATGCCGACAGCCACGCGCATGAGCATGTGCTGCGGCCGCTCCACC 16456 Query 146483 AC 146484 || Sbjct 16455 AC 16454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 145070 AACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCG 145129 ||||| || | | ||| || |||| || | ||| || ||| |||| ||||| ||||| Sbjct 20982 AACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCG 20923 Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 || ||||||||||| || ||| | |||||||||||| ||||||| | || ||| Sbjct 20922 TTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCGAGTTG 20863 Query 145190 CGCAGGCCGTGCT 145202 |||| |||||||| Sbjct 20862 CGCACGCCGTGCT 20850 >seq584 Length=13061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 514 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 573 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 574 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 633 Query 131127 GATTCCT 131133 ||| ||| Sbjct 634 GATGCCT 640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| | ||||||||||| || ||||| || || ||| Sbjct 2 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 61 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | || || | ||||| | || | |||| | Sbjct 62 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATG 121 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || || ||||| || || || || |||||||||| Sbjct 122 GTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 >seq186 Length=14886 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||| ||| |||||| ||||||||||| ||| ||| Sbjct 4463 CCTTCTGGATGTTGTAGTCGGCCAGGGTACGCCCGTCCTCCAGCTGCTTGCCGGCGAAGA 4522 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 | | |||||||||||| || ||||| || || ||||| Sbjct 4523 TCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| ||| || |||| || |||||| ||||||||||| Sbjct 7192 GTCGACTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGCTGCTTGCCC 7251 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || | | || ||||||| ||| | ||||| ||||| ||||| Sbjct 7252 GCAAATAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTC 7295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991258515840