Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq816 107 1e-18 seq947 100 2e-16 >seq816 Length=4168 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4137 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 4078 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4077 GTCGGTATTTAGCCTTA 4061 >seq947 Length=48402 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||| |||| ||||| ||| || || |||||| || || |||||||||| | Sbjct 33947 CCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 33888 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || ||||| || || || | ||| Sbjct 33887 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGA 33828 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||||||||||| || || ||| | || || Sbjct 33827 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACC 33768 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||||||| ||||| || ||||||||| Sbjct 33767 TCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATG 33720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || |||| ||||| ||| || || |||||| || || ||||| || | | Sbjct 33489 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 33430 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || |||| || || |||||||| || ||||| || || || | ||| Sbjct 33429 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 33370 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || ||||||||||| | ||| || || || Sbjct 33369 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 33310 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 || | || || || || || |||||||| ||||| || ||||||| Sbjct 33309 TCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932296000981