Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq947 136 3e-27 seq824 89.7 4e-13 seq584 86.0 5e-12 >seq947 Length=48402 Score = 136 bits (150), Expect = 3e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || ||||| ||||| |||||||| || ||||||| | || |||||||| || | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 25060 ACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||| ||| ||||| | || | ||| ||||| || || || || |||||||| Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGCATCCCGCCTGACCAG 33382 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || ||||||||| ||||| ||| ||| ||||| Sbjct 33383 CAGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAAC 33442 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | ||||| Sbjct 33443 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCT 33474 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || ||||| ||||| ||||||| || ||||||| | || |||||||| || | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 25060 ACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 |||| |||||| ||||| || ||| ||||| || || || || |||||||| | Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 |||| | || ||||||||||| || | || || | ||||| ||| ||| ||||| | Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 25180 TTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || ||| | ||||| Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCT 31718 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 || || || ||||| ||||| |||| || || | ||||| | || ||||||||||| Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || |||||||| Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| ||| ||| ||||| Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || | ||||| Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCT 32251 >seq824 Length=95357 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 51070 CCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCT-GTA 51128 ||||| | |||||||| || ||||| || ||| || ||||| || |||| ||| ||| Sbjct 17919 CCGCAGACGGACCACATGCAGCCCACGTAGCCGTTGGGGTCGCGCCCGTCCA-GCTCGTA 17861 Query 51129 ATGATCGTTTAGAAATATGGCATAAC-CCAATGCCATGTCTGCACTAGGCGTCCATTCCA 51187 | ||||| || | |||| | | | ||| ||| || | | |||||| |||| Sbjct 17860 CTTGTCGTTGAGGTAGATGG-ACACCTCCAGCGCCTCCTCCGGCGACGCCGTCCACTCCA 17802 Query 51188 TAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCC 51234 || |||||||||||||||||||||||| | ||||||||||||||| Sbjct 17801 GGATCTTCTTGGCCCAGTACATGCGCATGAAGCCGTGCATCTTGCCC 17755 >seq584 Length=13061 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| || ||||| ||||| ||||||| || |||| || | || ||||||||||| | Sbjct 155 TGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTGGAGGTGGAGTCGTCAG 96 Query 25060 ACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 |||| || ||| ||||| ||| ||| ||||| || || || || |||||||| | Sbjct 95 ACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 36 Query 25120 AGCGGATTATTTTTGCCGGCAAACA 25144 |||| | || || || ||||| || Sbjct 35 AGCGCCTGATCTTCGCTGGCAAGCA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433308718393565