Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3544 616 2e-171 seq3157 499 3e-136 seq3158 118 1e-21 >seq3544 Length=2542 Score = 616 bits (682), Expect = 2e-171 Identities = 677/898 (75%), Gaps = 2/898 (0%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | ||||||||||| | |||||||| ||| | || ||||||| Sbjct 1638 AACCGTTTATACATCGGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACT 1697 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 | |||| || || | | ||| | || ||||||||||| ||||| ||||| |||||||| Sbjct 1698 A-CTGTATTTATTATTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGA 1756 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 ||| ||| |||| ||| || | || ||||||||||| || |||||||| || | || | Sbjct 1757 GCCAGTATCAGGTTCTTTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTAC 1816 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || || || |||||| | |||||||| || || |||||||| || ||| | || ||||| Sbjct 1817 TTCAAATGCTATTGGTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATG 1876 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | |||||||||||||||| ||| | | || | ||| || ||||||| || | || Sbjct 1877 GTTATATAACGGTGGTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGC 1936 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 || ||||||||||| |||||| | |||| ||| | ||||||||||||||||| || Sbjct 1937 TTATATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGT 1996 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 ||| || || || ||||| || || || || || ||| | | || ||| ||||||| Sbjct 1997 AGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCA 2056 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 ||||||||| ||||| | ||||| | ||||| ||| || ||||| | |||| |||| Sbjct 2057 AGGTTCTTTTTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGT 2116 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619 ||||||||||| || |||||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 2117 ATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGT 2176 Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCG 166679 ||| ||||| ||| | || || || ||||| || | || ||||| || || | || Sbjct 2177 ATTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCG 2236 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 ||| || ||||||| || ||| ||| ||||||||| || |||||||||||||| || Sbjct 2237 TGAAACTACTGAAAACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAAC 2296 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 ||||||||||| || ||||| || ||||||||||| | || |||||||| ||||| || Sbjct 2297 TTACAACATCGTTGCAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTT 2356 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 ||||||||||| || | |||||||| | || || ||||||||||| |||| ||||| Sbjct 2357 TAACAACTCTCGTTCATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTT 2416 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 |||||| | ||| || || |||||||| ||| | ||||| |||||||||||||| || Sbjct 2417 CACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATC 2476 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCT 166977 | | ||| || |||||||| | ||||||||||| || | | ||||||||| Sbjct 2477 AGTTGTAGATTCACAAGGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 499 bits (552), Expect = 3e-136 Identities = 637/876 (73%), Gaps = 6/876 (1%) Strand=Plus/Plus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || |||||||| | | || || ||||| || ||||||||||| || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 167354 TCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACG 167413 ||||| ||| | ||||| || ||||||||||| ||| |||||| ||| |||| || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 167414 ACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTT---ACCTTGAGGGTGCT 167470 || ||||| || |||||||| || || || || ||| | | | || ||| Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGC---TAGCTCATATTTAGAAGGTTGC 1810 Query 167471 AATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTA 167530 |||||| | || || ||||| || || || ||| | ||||||||||||| | | | Sbjct 1811 AATTTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTC 1870 Query 167531 CTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGG 167590 |||||||||||||| | || || ||||| | | ||||| || | || || || ||| Sbjct 1871 CTTTGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGG 1930 Query 167591 GCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAG 167650 |||||| || || || || | |||| ||| || || ||||||||||| |||||||| Sbjct 1931 GCTTTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAA 1990 Query 167651 ATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCT 167710 || | |||| || |||||||| || || ||||| ||||| | || |||||| Sbjct 1991 ATTGCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCT 2050 Query 167711 GTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCG 167770 | ||||| |||||||| | || || || | || || || ||||||| |||||||| Sbjct 2051 CTTTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCT 2110 Query 167771 TCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGG 167830 |||||||||||||||||||| | ||| | |||| | || ||||| ||||||||| Sbjct 2111 AGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGG 2170 Query 167831 ACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCT 167890 || | || || || ||||||||||| ||||||||| | |||| || ||| | |||||| Sbjct 2171 ACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCT 2230 Query 167891 GCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACT 167950 ||||| ||||||| |||||||| |||||||| | ||||||||| || || || ||| Sbjct 2231 GCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACT 2290 Query 167951 TTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGA 168010 ||| || ||| | | || || | ||| ||||| ||||| | || || || || || Sbjct 2291 TTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGT 2350 Query 168011 TTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATG 168070 || |||||||||||||||||| | ||||| ||||| |||||||| |||||||||||| Sbjct 2351 TTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATG 2410 Query 168071 CTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTT 168130 | |||||||| || | || ||||||| ||| |||||||| | | ||| | ||| | Sbjct 2411 TTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTA 2470 Query 168131 AATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTT 168166 ||| | ||||| ||||| || || || || ||| || Sbjct 2471 AATTTACGTGCATATGATTTCGTATCACAAGAAATT 2506 >seq3158 Length=11629 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 168175 AGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCG 168234 ||| ||||| || ||||||||||||||||| ||||| || || | ||||| || | || Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 168235 TGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATT 168294 ||| ||||||||| | ||||||||| |||||||| |||||||||| || || || || Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 168295 GCCAAGAGGCAACGCTCT 168312 ||| | || |||||||| Sbjct 121 ACCACGTGGAAACGCTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567206112949600