Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq947 123 2e-23 >seq947 Length=48402 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| |||||||| || || || ||||| || || |||| || || ||||| || | | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | || || | || || ||||| ||||||||||| || || || || || | Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGC 33383 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || ||||||||||| ||| |||| ||| ||||||| | |||| ||||||| Sbjct 33384 AGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAACA 33443 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || || || ||| | ||| | || |||| ||||||| || Sbjct 33444 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGG 33489 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || |||| ||||| ||||| | | Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| ||||| || || || Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| |||||| | | ||||||||| Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||| | || |||| |||||||| || Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCTTGCGCGGTGG 33947 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || ||||| || || | ||||| || || |||| || || ||||| || | | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | || || | || || || || ||||||||||| || || || || || | Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || ||||||||||| ||| | ||||| |||||| | |||| ||||||| Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || || || ||| | ||| | || |||| ||||||| || Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGG 31733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 || || || ||||| || || | || || || ||| |||| || || ||||| | | Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| || || || || || Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| |||||| | |||| |||||| Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGCCTGCGCGGTGG 32266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709323546815