Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2073 104 5e-17 seq1096 104 5e-17 seq240 102 2e-16 seq930 96.9 7e-15 seq2139 95.1 2e-14 >seq2073 Length=15445 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 321 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 380 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 381 CCCACTTCGGGC 392 >seq1096 Length=36064 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 35773 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35714 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 35713 CCCACTTCGGGC 35702 >seq240 Length=4596 Score = 102 bits (112), Expect = 2e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 353 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 412 Query 142564 CCCACATCGGG 142574 ||||| ||||| Sbjct 413 CCCACTTCGGG 423 >seq930 Length=55056 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 218531 AGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATG 218590 |||||||||| || ||||| ||| ||| |||| || || || ||| | ||||||||| Sbjct 20713 AGGAGCTCATCCTGTTCTCCCGGGCTGACTTGGACCGCTCCATCCCCTCCATGGTGGATG 20772 Query 218591 GCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG 218643 | |||||||| ||||| ||||||||||||||| |||||||| |||||| Sbjct 20773 GGCTCAAGCCTGGCCAGCGCAAGATCCTCTTTGCCTGCTTCAAGCGCAACCTG 20825 >seq2139 Length=47113 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 279741 CGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGAC 279800 ||||| || || ||||||||||||| || ||||| || ||||| ||||||||| | ||| Sbjct 17846 CGCGCTATGCTCATGCGTGCCGATGTTCTGCTGCTGGACGAGCCTACCAACCACCTTGAC 17905 Query 279801 ACCACCAACGTAGCCTGGCTAGTGTCCTACCT 279832 ||||||||||| |||||||| | | |||||| Sbjct 17906 ACCACCAACGTGGCCTGGCTGGAGAGCTACCT 17937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027788719400491