Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1764 161 2e-34 seq947 156 8e-33 seq1019 134 3e-26 seq583 134 3e-26 seq2073 118 2e-21 seq1096 118 2e-21 seq584 118 2e-21 seq240 116 7e-21 seq186 100 5e-16 >seq1764 Length=16737 Score = 161 bits (178), Expect = 2e-34 Identities = 172/225 (76%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 172962 AGGTGGTGGTGCTCGACAAGATGGACTACTGCGCGACCCTGAACAACCT----GGCAACA 173017 |||||||||| || ||||| ||||||||||||| || || |||||||| |||| || Sbjct 4558 AGGTGGTGGTCCTGGACAAACTGGACTACTGCGCCACACTCAACAACCTTGAGGGCATCA 4617 Query 173018 GTTCGAGATGCTCCCAATTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTG 173077 | | ||| ||||| ||| ||||||||||| || || || | | || ||| | Sbjct 4618 A---GGGTTGC-CCCAACTTCCGCTTCGTCAAGGGTGACATCCAGTGCGCCGACCTCATC 4673 Query 173078 GCGCACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCAT 173137 |||| |||| | |||| || |||||||| | ||||||||||| || ||||| ||| Sbjct 4674 CTGCACATCCTTGACGAGGAGAAGATTGACACTGTCATGCACTTTGCGGCTCAGACACAT 4733 Query 173138 GTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAAC 173182 |||||||||||||| || ||||||||||| || |||||||||||| Sbjct 4734 GTGGACAACTCGTTTGGCAACTCGCTGGCCTTCACCATGAACAAC 4778 Score = 123 bits (136), Expect = 5e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 173318 CTCGAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCA 173377 || ||||| || ||||| || | || ||||||||||| || || |||||||| || || Sbjct 5452 CTGGAGCCCACCAACCCCTACTCGGCCGCCAAGGCTGGCGCTGAGATGATGGCCCGGGCG 5511 Query 173378 TATCACACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCG 173437 || ||||| || |||||||| || ||||| || || ||||||||||||||||||||||| Sbjct 5512 TACCACACCTCCTACAAGCTGCCGGTCATAGTCACACGCGGCAACAATGTGTATGGCCCT 5571 Query 173438 CATCAG 173443 |||||| Sbjct 5572 CATCAG 5577 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 173441 CAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGACCTC 173500 ||||||||||| || ||||| || || || || ||||| || |||| |||||| Sbjct 5894 CAGTTCCCCGAGAAGGCCATCCCCAAGTTCATCCTGCGCGCCCAGCGGGGCCAGGACCTG 5953 Query 173501 CCCATCCACGGGGACGGCGGGGCTTTGCGGTCGTATTTGTATGTTGATGACGTGGCAGAG 173560 ||||||||||| |||||| | | |||| || |||| || || |||||||| || Sbjct 5954 CCCATCCACGGCGACGGCCTGTCGGTGCGCAGCTACCTGTACGTGGAGGACGTGGCCGAC 6013 Query 173561 GCTTACATTACTATTTTGCTCAAGGGCAATGTCGG 173595 || ||||| || | ||||||||||| | || || Sbjct 6014 GCCTACATCACCGTGCTGCTCAAGGGCCAGGTAGG 6048 >seq947 Length=48402 Score = 156 bits (172), Expect = 8e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| || || || ||||| || |||||||| || |||| Sbjct 31733 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 31674 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| ||||| || || || | || ||||| || || Sbjct 31673 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 31614 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || |||||||||||| | || || || Sbjct 31613 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACC 31554 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 |||| |||||||| || || || |||||||| || || ||||||| Sbjct 31553 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | ||||| |||| || || || ||||| || |||||||| ||||| | Sbjct 33947 CCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 33888 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || ||||| || ||| Sbjct 33887 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGA 33828 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 33827 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACC 33768 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || | |||||| || || |||||||| Sbjct 33767 TCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 >seq1019 Length=25333 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 173349 AGGCTGGTGCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCG 173408 |||||||||| || |||||||| ||||| || |||| || |||||| | || | |||| Sbjct 22691 AGGCTGGTGCGGAGATGATGGCGCGTGCCTACTACACTTCCTACAAGATGCCCATTATCG 22750 Query 173409 TGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAAATGATCCCAAAAT 173468 | || ||||||||||| ||||||||||| || |||||||| || || ||||| || | Sbjct 22751 TTACCCGCGGCAACAACGTGTATGGCCCTCACCAGTTCCCGGAGAAGGCTATCCCCAAGT 22810 Query 173469 TTATTCTTCGCGCAACCCGTGGCCTGGACCTCCCCATCCACGGGGACGGCGGGGCTTTGC 173528 ||| || | || | || ||| ||||| || ||||| || || ||||| | | Sbjct 22811 TTACCCTGCTTGCCTCTCGCGGCGATGACCTGCCTATCCATGGCGATGGCGGTTCCACTC 22870 Query 173529 GGTCGTATTTGTATGTTGATGACGTGGCAGAGGC 173562 | ||||| |||| || || |||||||| ||||| Sbjct 22871 GCTCGTACCTGTACGTGGAGGACGTGGCGGAGGC 22904 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 173040 AGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCTGAAGCAGGAAA 173099 ||||| ||||||| ||||| || || |||| || || | || || || ||| | Sbjct 21556 AGTTCATCAAGGGCGATATCCAGTCCGCTGACCTACTTAGCTATGTGCTAGAGACGGAGA 21615 Query 173100 AAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACT 173159 | ||||| || | |||||||| || |||||||| || || ||||||||||| ||||||| Sbjct 21616 AGATTGATACCGTCATGCACTTCGCGGCGCAGACGCACGTTGACAACTCGTTTGGTAACT 21675 Query 173160 CGCTGGCATTTACCATGAACAAC 173182 ||||||| || |||||||||||| Sbjct 21676 CGCTGGCTTTCACCATGAACAAC 21698 >seq583 Length=2907 Score = 134 bits (148), Expect = 3e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || |||| Sbjct 2724 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2783 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| || ||||| || || | || |||||||| ||| Sbjct 2784 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 2843 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||| ||||| || || ||||| ||||| || ||| |||||||||| || || || Sbjct 2844 GTGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGACGACTCCACC 2903 Query 68415 TCCA 68418 |||| Sbjct 2904 TCCA 2907 >seq2073 Length=15445 Score = 118 bits (130), Expect = 2e-21 Identities = 73/77 (95%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 317 AGAG-GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 375 Query 84511 CGAGCCCCACATCGGGC 84527 |||||||||| |||||| Sbjct 376 CGAGCCCCACTTCGGGC 392 >seq1096 Length=36064 Score = 118 bits (130), Expect = 2e-21 Identities = 73/77 (95%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 35777 AGAG-GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 35719 Query 84511 CGAGCCCCACATCGGGC 84527 |||||||||| |||||| Sbjct 35718 CGAGCCCCACTTCGGGC 35702 >seq584 Length=13061 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 ||| || | |||||| || ||||| || || | || ||||| || || ||||| ||||| Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 ||| || ||||||||||| || ||| |||||||||| || || || |||| || || Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 ||| || || || ||||||||||| || ||||||| Sbjct 121 GGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 >seq240 Length=4596 Score = 116 bits (128), Expect = 7e-21 Identities = 72/76 (95%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 349 AGAG-GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 407 Query 84511 CGAGCCCCACATCGGG 84526 |||||||||| ||||| Sbjct 408 CGAGCCCCACTTCGGG 423 >seq186 Length=14886 Score = 100 bits (110), Expect = 5e-16 Identities = 143/201 (71%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 ||||| ||||| || || ||||| || |||| || || ||| || || | |||||| Sbjct 7189 AGCGTCGACTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGCTGCTTG 7248 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || |||| || | || | |||| | || |||||||||||||| |||||||| ||| Sbjct 7249 CCCGCAAATAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTCCTGAATCTTGGCC 7308 Query 68382 TTGACGGCCTCGATGGTGTC---TGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || ||| ||| | | |||| | || || || || | ||||| || | || || Sbjct 7309 TTCACGCTCTCAACGCTGTCAGAAGAGGACTCCACGTCAATAGTGATTGTCTCGCCGCTG 7368 Query 68439 AGGGTCTTGACGAATATCTGC 68459 | |||||||| ||||||||| Sbjct 7369 ACGGTCTTGAAAAATATCTGC 7389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921580339457720