Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1200 136 7e-27 seq2126 107 4e-18 seq1364 89.7 1e-12 >seq1200 Length=20974 Score = 136 bits (150), Expect = 7e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 42502 AGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG 42561 |||| ||| |||||||||||||||||| ||||| |||||| | ||||| ||| ||||| Sbjct 4460 AGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCCGAGATGTACT 4519 Query 42562 CCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCA 42621 || ||||| | |||||||| ||| | | |||| ||| | || ||| | |||| Sbjct 4520 CCCTGCTGCTGGAGTCGTACATCAAGGACTCTGCCGAGAAGAACCGCCTCTTCCACGCCA 4579 Query 42622 TGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC 42674 |||||| |||| | |||||||||||||||||||||||||||| |||||| Sbjct 4580 CCGAGACGGTGCCAGTCGTCAAGAAGAAGGCGGACTGGGCGCTCAAGTGGATC 4632 >seq2126 Length=41412 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||||||||| |||||||||||| ||||||| ||| || ||||||||| |||||| Sbjct 18826 GTGCAGAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCAC 18767 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 | ||||||||||||||||||||| || ||||| | |||||| | | || | Sbjct 18766 GAGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCACCTGGGCCTCCATCACCGCAAAC 18707 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGC 244895 || || | | ||||||| ||| |||||||| ||| Sbjct 18706 CACAGCTGCTGCGCCTTGATGGTCTTGCGAGCCCTGC 18670 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/139 (74%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC---A 244550 |||||||||| | ||||||||| | ||| ||||||||||||||| || ||| | | Sbjct 19881 CCTGCACGCCCAGGCCGATGGGGCGGTGGCGCTTGTTGGAGCGCTCGG---CGGTCTCAA 19825 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGT 244610 | ||||| ||||| ||||||| | |||||| |||||||| || | | || | || | Sbjct 19824 CTGGGTAGTAGTTGACGTCGATGATCTTGTTCAGGTTGCGCGTCACCGCGCTTGCCACCT 19765 Query 244611 CGGCCAGCAGCTGAAAGTC 244629 || |||| || |||||| Sbjct 19764 CGTGCAGCTTCTCAAAGTC 19746 >seq1364 Length=60691 Score = 89.7 bits (98), Expect = 1e-12 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 42485 AGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||||||||| ||| |||||||| ||| |||||||||||| || |||||||||| Sbjct 44228 AGAGGTGCAGCTACCC-GAGGCGCGTGCCTTTTACGGCTTCCAGGCGGCGATAGAGAACG 44286 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 ||||| ||| |||||| | ||||| | ||||||| ||| | | |||||| Sbjct 44287 TGCACAGCGAGATGTACGGCCTGCTGCTGGAGGAGTACATCAAGGACGCTGACGAGCGCG 44346 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || ||||| | |||||| ||||| || || |||||| Sbjct 44347 ACAGGCTGCTGCGGGCCATTGAGACCATCCCGTGCATC 44384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944296102719760