Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq947 122 2e-22 seq584 95.1 3e-14 seq583 84.2 5e-11 >seq947 Length=48402 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || ||||| || |||| Sbjct 32270 CATG-CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGT 32212 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || ||||| || || || | || || || || |||||||| ||||| || | Sbjct 32211 CGGCCAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAG 32152 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || ||||| || || || | || ||| | Sbjct 32151 GGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACT 32092 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || ||||| ||||| || || ||||| || Sbjct 32091 CCACCTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 >seq584 Length=13061 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||||||||| ||||| || | ||||| || || || |||||||| Sbjct 11 TGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 70 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || ||||| || || || | || ||| || || || ||||| || ||||| ||| Sbjct 71 TTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATGGTCTTGCCG 130 Query 288448 GTCAGAGTCTTGACGAATATCTGCA 288472 ||||| |||||||| || ||||||| Sbjct 131 GTCAGGGTCTTGACAAAAATCTGCA 155 >seq583 Length=2907 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | || || || || | |||| || || ||||| || |||| Sbjct 2720 CATG-CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 2778 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || ||||| ||||| || | || || || ||||||||||| ||||| || | Sbjct 2779 CGGCCAGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTG-GTCG 2837 Query 288362 CTGGGA-TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 |||| | || || ||||||||||| || || ||||| || || || Sbjct 2838 GGGGGAGTGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAAT 2884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179599217610378