Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq947 125 8e-24 seq583 96.9 4e-15 seq584 93.3 5e-14 seq186 82.4 8e-11 >seq947 Length=48402 Score = 125 bits (138), Expect = 8e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||| || |||||| || || ||||| || ||||| || ||| || Sbjct 31721 CGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCG 31662 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 31661 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 31602 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | ||||| || ||||| || | ||||||| Sbjct 31601 TCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATG 31542 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 || ||||| || || ||||| |||||||| |||| Sbjct 31541 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || |||| ||||| ||||| || |||||| || || |||||||||||||| || || Sbjct 33938 AAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGA 33879 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || |||||||| || || || || || ||||||||||| | || | || |||| Sbjct 33878 CCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCC 33819 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 |||||| ||| || || | || | | ||||| || ||||| || | |||| Sbjct 33818 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTG 33759 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| ||||| || | ||||| ||||| || ||||| Sbjct 33758 ATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 111 bits (122), Expect = 2e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||| || |||||| || || ||||| || ||||| || || | Sbjct 33477 CGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 33418 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || ||||||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 33417 TCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 33358 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | || | || | || | | ||||| || ||||| || | |||||| Sbjct 33357 TCC-TGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTGAT 33299 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 ||| ||||| || | ||||| ||||| || |||| Sbjct 33298 GGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | || |||||| || || ||||| || ||||| || ||| | Sbjct 32254 CGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCA 32195 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 32194 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 32135 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | ||||| ||| ||||| || | |||||| Sbjct 32134 TCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTGATC 32075 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || ||||| |||||||| || || Sbjct 32074 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| |||| ||| |||||| || || ||||| || ||||| || ||| || Sbjct 31203 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCG 31144 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 31143 TCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 31084 Query 42114 TCC 42116 ||| Sbjct 31083 TCC 31081 >seq583 Length=2907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| || || ||||| || ||||| || ||| || Sbjct 2736 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCG 2795 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || || ||||||||||||| || || |||||| Sbjct 2796 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCCTTA 2855 Query 42114 TCCATGATTTT 42124 ||| ||| || Sbjct 2856 TCCTGGATCTT 2866 >seq584 Length=13061 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || || ||||||||||| | || | || ||||||| Sbjct 2 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 61 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| ||| || | || | | ||||| ||| ||||| || | ||| ||| Sbjct 62 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATG 121 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 || ||||| || || ||||| ||||| || |||| Sbjct 122 GTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || || Sbjct 527 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 586 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || |||||||| ||||| || || || ||||||||||| Sbjct 587 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 627 >seq186 Length=14886 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || ||||| || ||| |||| || |||||||| || ||||| | Sbjct 4463 CCTTCTGGATGTTGTAGTCGGCCAGGGTACGCCCGTCCTCCAGCTGCTTGCCGGCGAAGA 4522 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 | || ||||||||||| | || | || |||||||||| Sbjct 4523 TCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543188009125840