Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq947 113 4e-20 seq2126 89.7 5e-13 >seq947 Length=48402 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | ||| | | | |||||||| || |||||||||||| Sbjct 31734 GCCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 31675 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| |||||| || || || |||| | |||| || ||||| ||||| || || Sbjct 31674 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGG 31615 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 31614 GATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCAC 31555 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 ||| | ||| | || || || ||||| || || ||||| ||||||| Sbjct 31554 CTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || ||| ||||| || || || |||| | Sbjct 32233 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCA 32174 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 32173 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTCACA 32114 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||||||||| | ||| | ||| || |||||||| || || Sbjct 32113 TTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTC 32054 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||| ||| Sbjct 32053 ACAAAGATCTGTATG 32039 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 |||||| || ||||| |||| || | ||| | | | |||||||| || |||||||| || Sbjct 33951 GCAGCCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATC 33892 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 || || || ||||| || || || || | | | || || ||||| ||||| || Sbjct 33891 AGCCAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGG 33832 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || || || ||||| ||| || || | | || | |||||| | ||||| Sbjct 33831 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTC 33772 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| | ||| | || || ||||||| || || ||||||||||||||| Sbjct 33771 CACCTCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATG 33720 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| || | ||| | | | |||||||| || |||||||||||| Sbjct 33490 GCCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 33431 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || |||| | |||| || ||||| ||||| || || Sbjct 33430 CAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGG 33371 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | | || | ||||| | ||||||| Sbjct 33370 GATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCA 33312 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 |||| | ||| | || || || |||| || || ||||||||||||| Sbjct 33311 CCTCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 >seq2126 Length=41412 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 154277 GCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGG 154336 || || || ||| |||||| ||| || || | || ||||| ||| || ||||| Sbjct 16633 GCAGACCAGGAAGCACGAAGACAGCTGGGGCCGCGGGGTGCCCGCGTTAAACAGCGTGGG 16574 Query 154337 ACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGAT 154396 || ||||| || ||| |||||||| | | |||| || |||||||| || || Sbjct 16573 GCTGGCGTGTGTGAACCAGCGCTGGCTCATGAGGTGGTAGGTCTCGATGGCAGAGTCAAT 16514 Query 154397 ATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 || || ||||||||||| || ||||||||||||||||||||||| || || Sbjct 16513 GTCCTCCTTGTGAATGCCGACAGCCACGCGCATGAGCATGTGCTGCGGCCGCTC 16460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239751824720