Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq947 136 4e-27 seq2126 114 1e-20 seq584 95.1 1e-14 >seq947 Length=48402 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || |||| ||||| ||| | |||||||| || || || |||||||| || Sbjct 33947 CCACCGCGCAAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCC 33888 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || || | |||| |||||||| || || || Sbjct 33887 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGA 33828 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | | ||| || Sbjct 33827 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACC 33768 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || ||||||||||||||| Sbjct 33767 TCAAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATG 33720 Score = 129 bits (142), Expect = 6e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| ||| | |||||||| || || || ||||| ||| || Sbjct 31733 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 31674 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 31673 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 31614 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||||| ||| || Sbjct 31613 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACC 31554 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || | || | || ||||||||||| || || ||||| ||||||| Sbjct 31553 TCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||||||||| || || || ||||| ||| || Sbjct 32266 CCACCGCGCAGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 32207 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || |||||| |||||||| || || || Sbjct 32206 AGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 32147 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | || | |||||| | ||| || Sbjct 32146 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACC 32087 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| || || ||||| ||||| ||| Sbjct 32086 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTATG 32039 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| ||| | |||||||| || || || ||||| ||| || Sbjct 33489 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 33430 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| |||||||| || || || |||||| |||||||| || || || Sbjct 33429 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 33370 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||| | | || | ||||||| ||| || Sbjct 33369 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 33310 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || | || | || |||||||||| || || ||||||||||||| Sbjct 33309 TCCAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| || || || ||||| ||| || Sbjct 31215 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 31156 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| | || | |||||||| || || || Sbjct 31155 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGG 31096 Query 127007 ATGCCCTCCTTGTCC 127021 ||||||||||||||| Sbjct 31095 ATGCCCTCCTTGTCC 31081 >seq2126 Length=41412 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 147280 CCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACAC 147339 || |||||| ||| | || ||||| |||||| |||||| ||| ||||| || Sbjct 16656 CCCTCGATGGAGTCGGCTTTCATGCAGACCAGGAAGCACGAAGACAGCTGGGGCCGCGGG 16597 Query 147340 GTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCAATTGA 147399 |||||||| ||||||||||||||||||||| |||||| || | | ||||| | || Sbjct 16596 GTGCCCGCGTTAAACAGCGTGGGGCTGGCGTGTGTGAACCAGCGCTGGCTCATGAGGTGG 16537 Query 147400 TACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGC 147459 || || || ||||| || ||| || ||||||| | | || |||||||||||| Sbjct 16536 TAGGTCTCGATGGCAGAGTCAATGTCCTCCTTGTGAATGCCGACAGCCACGCGCATGAGC 16477 Query 147460 ATGTGCTGGGGTCGTTCC 147477 |||||||| || || ||| Sbjct 16476 ATGTGCTGCGGCCGCTCC 16459 >seq584 Length=13061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||||| || || || ||||||||||| Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||| | | || | |||||| | ||| || || | || | Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || ||||||||||| || || ||||||||||||| Sbjct 121 GGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479099332240