Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq3544 686 0.0 seq3157 439 3e-118 >seq3544 Length=2542 Score = 686 bits (760), Expect = 0.0 Identities = 695/905 (77%), Gaps = 0/905 (0%) Strand=Plus/Minus Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| ||||||||| | | ||| ||||| ||||| | ||||||||||| ||| Sbjct 2542 CCAAGGTTAGCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCT 2483 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || |||||||||||||| ||||| | ||| |||||||| || || ||| | | Sbjct 2482 ACAACTGATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAA 2423 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 ||||||||||| || | ||||| ||||| || || | |||||||| | ||||| ||| Sbjct 2422 GCAGTGAACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAG 2363 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 ||||| || ||||| |||||||| || | |||||| ||||| |||||||| ||||||||| Sbjct 2362 TTGTTAAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATG 2303 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 ||||| || ||||||||||||||||| || |||||| ||| || || ||||| Sbjct 2302 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTA 2243 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 |||||||||| |||||||| ||||| | ||||||||||| ||| || | |||||| Sbjct 2242 GTTTCACGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCA 2183 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 ||||| |||||||| || || ||||||||||| |||||||| |||||||| || |||||| Sbjct 2182 CCAAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCT 2123 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| |||| |||| | ||||| |||||||| || || | ||||||| | ||||| ||| Sbjct 2122 TGGAATACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAA 2063 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 ||||||||||||| ||| || | | |||||||||| || ||||| || ||||| || Sbjct 2062 GAACCTTGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAA 2003 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 || |||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||| Sbjct 2002 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCC 1943 Query 8189 ATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 || || || | |||||||| | || ||| | | | | |||| ||||||||||||| Sbjct 1942 ATATAAGCGCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTA 1883 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | ||| || || | ||||| |||||||| || || |||||||| | ||||||||| Sbjct 1882 TATAACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCA 1823 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 || |||| ||||| || |||||||| || |||||||| || || | | ||||| | Sbjct 1822 TTTGAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGAT 1763 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAA 8428 || || |||||||| || ||||| || |||||||| ||||| | ||| | | || || Sbjct 1762 ACTGGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAAT 1703 Query 8429 CAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGA 8488 | ||| || | | | ||||||||||| | ||||| |||||||||| || | | Sbjct 1702 ACAGTAGTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAAA 1643 Query 8489 CGATT 8493 || || Sbjct 1642 CGGTT 1638 >seq3157 Length=2513 Score = 439 bits (486), Expect = 3e-118 Identities = 631/886 (71%), Gaps = 4/886 (0%) Strand=Plus/Minus Query 6410 ATCTCTTGTGAAACAAAGTCATAAGCTC-TAAGGTTAAGTGCAAGACCAATAATACCAAT 6468 || |||||||| || || ||||| || | ||| |||| ||| | ||||| | |||||| Sbjct 2505 ATTTCTTGTGATACGAAATCATATGCACGTAAATTTAA-TGCTAAACCAACTACACCAAT 2447 Query 6469 GCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTT 6528 | |||||||||| | || ||||| |||| ||||||||| |||| |||||| || Sbjct 2446 AGCACTCATCCAAAGACCAGTTACTGGAACGAACAACATAAAGAAGTGTAACCAACGTTT 2387 Query 6529 ATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATA 6588 ||| || || | |||||| || |||||||| |||||||| || || || | ||||| Sbjct 2386 ATTAGAAAAAGCTACACCAAAAATTTGAGACCAAAAACGATTTGCTGTTACAAAAGAATA 2327 Query 6589 GGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTC 6648 ||| || ||| ||||||| || | ||| || ||||||||| | || |||||||| Sbjct 2326 GGTTTCTTCTGCTTGTGTTGGGTTAAAAGCACGGAAAGTATTAGCACCATCTCCATCTTC 2267 Query 6649 AAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGAT 6708 ||| | |||||| ||||| || ||||| ||||| ||| | || | ||| |||||||| | Sbjct 2266 AAAAAGAGTATTTTCTACTGTTGCACCATGAATTGCAGAAAGAAGTGCGCCACCTAAAAC 2207 Query 6709 ACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAA 6768 ||| || ||||||||||||||||| || || | |||||||| || || || || | || Sbjct 2206 ACCAGCAACACCCATCATATGAAATGGATTTAATGTCCAGTTATGAAAACCTTGGAAAAA 2147 Query 6769 GAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTG 6828 | | ||| ||||||||||||||||||||||| || ||||| ||||||| || || Sbjct 2146 TAAAATGAAACGGAATATCGCTGCAACACCAAAACTAGGTGCAAAAAACCAACCAGATTG 2087 Query 6829 TCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGAT 6888 || | || || || | || ||||| ||||| | |||||| || | |||||||| || Sbjct 2086 ACCTAATGGGTAAATTAAGAAAACAGAAACAAAAAGAGCAATTGGCGCTGAAAACGCAAT 2027 Query 6889 TGCATTGTAGGGACGAATACCGACTAGACGTGCGATCTCAAACTGCCGAAGCATGAAACC 6948 ||| || || |||||||| ||| |||||| || ||||| || |||||||| ||||| Sbjct 2026 TGCGTTATAAGGACGAATTTTTACTGAACGTGCAATTTCAAATTGACGAAGCATAAAACC 1967 Query 6949 TATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCA 7008 ||||| |||| | || || || || ||||| ||| || || || | ||| ||| Sbjct 1966 AATAAGACCAAACGAACCATGAAGTGCTGTAAAAGCCCAAAGGCCGCCTAATTGACACCA 1907 Query 7009 GCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGC 7068 || ||||| || || ||||| |||||||| || | | || ||||| || | | Sbjct 1906 ACGAGTAAAATCACCTTGTGCTTCAGGACCCCAAAGGAATAATAAAGAATGACCCATACT 1847 Query 7069 GTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGC 7128 | ||| || || || || || ||||| | ||||| || || || | ||| || ||| Sbjct 1846 ATTAGCTGGTGTAGAAACTGCCGCAGTTAAAAAATTGCAACCTTCTAAATATGAGCTAGC 1787 Query 7129 AATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGC 7188 | || ||||| ||||| || || || || || || || | ||| | || | ||| Sbjct 1786 TAATCCATGAGTATACCAAGATGTTACAAATGTAGTTCCTGTAAACCATGCACCAACTGC 1727 Query 7189 CAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACG 7248 || |||||||||||||| || | | || ||||| || || || || || | ||||| Sbjct 1726 AAGATAAGCAGTAGGGAAAAGTAATAACCCAGACCACCCTACGAATACAAAGCGGTCACG 1667 Query 7249 CTTAAGCCAGTCATCGAGTACATCAAACCACCCCCTTGTTGTTCTT 7294 ||||| || || | | |||||||| || | ||| ||||| Sbjct 1666 ACGTAGCCAATCGTCAACAATGTCAAACCAACCGC--GTTTTTCTT 1623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622096407779440