Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq947 174 2e-38 seq583 116 4e-21 seq584 107 2e-18 seq186 96.9 4e-15 >seq947 Length=48402 Score = 174 bits (192), Expect = 2e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||||| ||| |||||| ||||| |||||||||| || |||||| || Sbjct 31721 CGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCG 31662 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | ||| | || ||||||| Sbjct 31661 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 31602 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || ||||| |||| ||||||| Sbjct 31601 TCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATG 31542 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 || ||||| ||||| || || |||||||| |||| Sbjct 31541 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | ||| |||||| ||||| |||||||||| || |||||| | Sbjct 32254 CGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCA 32195 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 32194 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 32135 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| ||| ||||| |||| |||||| Sbjct 32134 TCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTGATC 32075 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || |||||||| || || Sbjct 32074 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 152 bits (168), Expect = 6e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||||| ||| |||||| ||||| |||||||||| || ||||| | Sbjct 33477 CGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 33418 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | ||| | || ||||||| Sbjct 33417 TCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 33358 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||| | || | | ||||| || ||||| |||| ||||||| Sbjct 33357 TCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTGATG 33298 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 || ||||| |||| || || ||||| || |||| Sbjct 33297 GTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| ||||||||||| ||| |||||| ||||| ||||| || | || ||||| Sbjct 33938 AAGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGA 33879 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || ||||||||||| || || |||| |||||||||||| | || | || |||| Sbjct 33878 CCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCC 33819 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| |||||| ||| | || | | ||||| || ||||| || | |||| Sbjct 33818 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTG 33759 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| |||| || || ||||| || ||||| Sbjct 33758 ATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || |||||| ||||| |||||||||| || |||||| || Sbjct 31203 CGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCG 31144 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| || | |||||||||||| | || | || ||||||| Sbjct 31143 TCCTCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 31084 Query 46499 TCC 46501 ||| Sbjct 31083 TCC 31081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| || |||||| ||||| |||||||||| || ||||| | Sbjct 32973 CGCAGCACCAAATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 32914 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || || | |||||||||||| Sbjct 32913 TCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTC 32873 >seq583 Length=2907 Score = 116 bits (128), Expect = 4e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||||| || |||||| || Sbjct 2736 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCG 2795 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||||| || || |||||| Sbjct 2796 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCCTTA 2855 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCA 46550 ||| |||||| ||| | || | | ||||| ||| ||||| |||| Sbjct 2856 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCA 2907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| ||| |||||| ||||| |||||||||| || ||||| | Sbjct 2066 CGCAGCACTAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2125 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 2126 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 2166 >seq584 Length=13061 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||| | || | || ||||||| Sbjct 2 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 61 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| ||| ||||| |||| ||| ||| Sbjct 62 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATG 121 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 || ||||| ||||| || || ||||| || |||| Sbjct 122 GTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 527 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 586 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || |||| |||||||||||| Sbjct 587 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 627 >seq186 Length=14886 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||||| || || ||| |||| || ||||||||||||||||| | Sbjct 4463 CCTTCTGGATGTTGTAGTCGGCCAGGGTACGCCCGTCCTCCAGCTGCTTGCCGGCGAAGA 4522 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 ||| ||||||||||| | || | || |||||||||| Sbjct 4523 TCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 4560 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCA--ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 ||||| |||| ||| |||| ||| ||||| |||||||||| ||| || || |||| | Sbjct 6414 ACCAGGTGCAGCATGAACTC--CTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCT 6471 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGC 46490 | |||||||||| | |||||| |||||||||||||| |||| || Sbjct 6472 CCAGCTGCTTGCTCACATATATCAGGCGCTGCTGGTCGGGTGGCATGC 6519 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||||| || ||| || |||| || ||||||||||| || || Sbjct 7197 CTCCTTGTGTATGTTGTAGTCGGCCAGGGTGTGCCCGTCCTCCAGCTGCTTGCCCGCAAA 7256 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 || | |||||||| |||| ||| | || ||||||||| ||||| Sbjct 7257 TAGTAGGCGCTGCTCGTCGTGCGGGATGCCTTCCTTGTCCTGAATCTT 7304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212603932520