Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq947 134 1e-26 seq583 125 7e-24 seq1200 100 3e-16 seq584 96.9 3e-15 seq186 89.7 5e-13 >seq947 Length=48402 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || || || || || || || ||||| |||||||| | || || ||| || | | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAA 38363 ||| | | | | | || | || |||| ||||| ||||| || |||||| ||||| Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACCAG 31626 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| |||||||| |||| ||||||||| |||||||||| Sbjct 31627 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAAC 31686 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||||| |||||||||| || | || ||| Sbjct 31687 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 31734 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || ||| | | Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| |||||||| |||||||| || | |||||||| || |||||| Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 ||||| ||||| | || |||||| |||||||||| ||| | || ||| || Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCTTGCGCGGTGGCTGC 33951 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| || |||| ||||||||| |||||||| Sbjct 31082 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTTATTTTCGCGGGCAAGCAGCTGGAG 31141 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| ||||||||||||||| ||||| | || ||||| ||||||||| Sbjct 31142 GACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTG 31201 Query 38457 CGTTTGAGAGGCGGC 38471 || || | || ||| Sbjct 31202 CGCCTGCGTGGTGGC 31216 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || || || || || || || || || ||||| || ||||| | || || ||| | | Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | ||||| || |||||||||| || | || ||| Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGCCTGCGCGGTGGC 32267 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || || || || || | || ||||| |||||||| | || || ||| || | | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAA 38363 ||| | | | | || | || || | ||||| ||||| || |||||| ||||| Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACCAG 33382 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | |||||||| |||||||||| Sbjct 33383 CAGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAAC 33442 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||||| |||||||||| || | || ||| Sbjct 33443 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGGC 33490 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| ||||| | |||||||| |||||||| || | ||| Sbjct 32861 GGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 32920 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | || ||||||||||||||||| || | Sbjct 32921 ACCCTGGCCGACTACAACATCCAGAAGGAGTCAACCCTGCATTTGGTGCTGCGCCTGCGC 32980 Query 38466 GGCGGC 38471 || ||| Sbjct 32981 GGTGGC 32986 >seq583 Length=2907 Score = 125 bits (138), Expect = 7e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| | |||| ||||||| ||||| || || | ||| ||||| Sbjct 2866 AAGATCCAGGATAAGGAGGGCACTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAG 2807 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| |||| ||||||||| ||||||||||||||| ||||| | |||||||| Sbjct 2806 CAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 2747 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| || | |||||| Sbjct 2746 CTGGTGCTGCGCCTGCGCGGCGGC 2723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 2178 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 2119 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| ||||||||||||||| ||||| | || ||||| | |||||||| || | Sbjct 2118 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACACTGCACCTAGTGCTGCGCCTGCGC 2059 Query 38466 GGCGGC 38471 |||||| Sbjct 2058 GGCGGC 2053 >seq1200 Length=20974 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 |||||| ||||||||| || | |||||| || | ||| ||||| ||||||||||| || Sbjct 5291 CAAGCAGGCAAAGTCGGTGTGGAGGCCCTCATCACGGGAGATGAGCTCGTTGCTGAAGGT 5232 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || ||| ||||| | |||||| || |||||||| || |||| | |||||||| Sbjct 5231 CAGGCCCGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAACTGC 5179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 133239 CCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGAT 133298 |||| ||||| |||||||| || | ||| ||| || |||| || || ||||| Sbjct 3987 CCGCACCTCGGGGACCTGCACCTCCTTCATGAACCGCACGCCCAGGTTCTCCAGCACGAT 3928 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 |||||| || || || ||||||||||||||| |||||| || |||| |||||| Sbjct 3927 GCCGTCAGACGCCGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGCTTCTCGCCGTCGTT 3868 Query 133359 CAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 | |||| ||||||||| || ||| || |||||| |||||||| Sbjct 3867 C-AGCGTCTCCCAGTCCTGCACGTCGCTGCCCAGGTCAACCTCCTC 3823 >seq584 Length=13061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | || ||||| |||||||| |||| ||| Sbjct 639 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGC 580 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | |||||||| |||||||||| || | Sbjct 579 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 520 Query 38466 GGCGGC 38471 |||||| Sbjct 519 GGCGGC 514 >seq186 Length=14886 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| |||||||| Sbjct 4559 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAG 4500 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 |||| ||| ||||| ||||||||||||||| |||| Sbjct 4499 GACGGGCGTACCCTGGCCGACTACAACATCCAGAAGG 4463 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/202 (70%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC-- 38303 ||| ||||| | || || ||| ||| | || ||||| | ||||| ||| || | Sbjct 7389 GCAGATATTTTTCAAGACCGTCAGCGGCGAGACAATCACTATTGACGTGGAGTCCTCTTC 7330 Query 38304 -GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC-CGACC 38361 |||||||| | | | || | || || | ||||| || || || ||||| |||| Sbjct 7329 TGACAGCGTTGAGAGCGTGAAGGCCAAGATTCAGGACAAGGAAGGCAT-CCCGCACGACG 7271 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || | | |||||||| |||||||| |||| || |||||| |||||||| Sbjct 7270 AGCAGCGCCTACTATTTGCGGGCAAGCAGCTGGAGGACGGGCACACCCTGGCCGACTACA 7211 Query 38422 ACATCCAAAAGGAAGCGACGCT 38443 |||| || ||||| ||||||| Sbjct 7210 ACATACACAAGGAGTCGACGCT 7189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149973363840