Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3544 643 1e-179 seq3157 508 7e-139 seq3158 82.4 9e-11 >seq3544 Length=2542 Score = 643 bits (712), Expect = 1e-179 Identities = 683/898 (76%), Gaps = 2/898 (0%) Strand=Plus/Plus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | || |||||||||| || ||| | |||||||| ||| | || |||||||| Sbjct 1638 AACCGTTTATACATCGGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACT 1697 Query 179835 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 179893 | ||| || || | | || || ||||| || ||||| || || ||||| |||||||| Sbjct 1698 A-CTGTATTTATTATTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGA 1756 Query 179894 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 179953 || || | ||||| | | || ||||||||||| || ||||||| || ||||| | Sbjct 1757 GCCAGTATCAGGTTCTTTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTAC 1816 Query 179954 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTG 180013 ||| || || |||||| | |||||||| || || |||||||| || || | ||||| || Sbjct 1817 TTCAAATGCTATTGGTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATG 1876 Query 180014 GCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGC 180073 | | |||||||||||||||| |||| | |||| | ||| || | || || || | || Sbjct 1877 GTTATATAACGGTGGTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGC 1936 Query 180074 CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGT 180133 || ||||||||||||||||||||||||| || || |||||||| || |||||| || Sbjct 1937 TTATATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGT 1996 Query 180134 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 180193 ||| ||||| ||||| || ||||| || |||||||||| | | || ||| ||||||| Sbjct 1997 AGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCA 2056 Query 180194 AGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGT 180253 |||||| || ||||| | ||||| | || |||||||| || ||||| | |||| |||| Sbjct 2057 AGGTTCTTTTTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGT 2116 Query 180254 TTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGT 180313 ||||||||||| || |||||||| |||||||| ||||||||||| || || || ||||| Sbjct 2117 ATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGT 2176 Query 180314 CTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCG 180373 || || |||||| | || || || ||||| |||||| | || || ||||| || |||| Sbjct 2177 ATTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCG 2236 Query 180374 TGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGAC 180433 |||||| ||||||| || || ||| |||||||| || |||||||||||||| || Sbjct 2237 TGAAACTACTGAAAACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAAC 2296 Query 180434 CTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTT 180493 |||||||||||||| || || || |||||||||||| | || ||||| ||||| || || Sbjct 2297 TTACAACATCGTTGCAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTT 2356 Query 180494 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTT 180553 |||||||| |||||| | |||||||| | || || |||||||| || | || ||||| Sbjct 2357 TAACAACTCTCGTTCATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTT 2416 Query 180554 CACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 180613 |||||| | || | || |||||||| ||| | ||||| |||||||||||||| || Sbjct 2417 CACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATC 2476 Query 180614 CATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCT 180671 | | ||| ||||||||||| | ||||||||||| ||| | | ||||| ||| Sbjct 2477 AGTTGTAGATTCACAAGGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 508 bits (562), Expect = 7e-139 Identities = 634/869 (73%), Gaps = 0/869 (0%) Strand=Plus/Plus Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480 ||||||||||| |||| || ||||| || ||||||||||| || || || |||||| Sbjct 1637 TGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGGTCT 1696 Query 181481 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACT 181540 || || | ||||| || ||||||||||||||| |||| | ||| | || || ||||| Sbjct 1697 GGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACTACA 1756 Query 181541 TTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTC 181600 ||||| || || ||||| || || ||||| || || || | || ||| ||||| Sbjct 1757 TTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAATTTT 1816 Query 181601 CTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 181660 | || ||||| || || || || ||| | ||||||||||||| | | | |||||| Sbjct 1817 TTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTTTGG 1876 Query 181661 GGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTT 181720 ||||||||||| || || ||||| || ||| ||| | || || || ||||||||| Sbjct 1877 GGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCTTTT 1936 Query 181721 GTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCT 181780 || || || || | || | |||||| ||||||||||| | ||||||||| |||| Sbjct 1937 ACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATTGCA 1996 Query 181781 CGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTC 181840 ||| | | ||| || || || || || ||||| ||||| | || |||||| | || Sbjct 1997 CGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTTTTT 2056 Query 181841 GTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTC 181900 || ||||| || | || || || | || ||||| ||||||| ||||| || ||||| Sbjct 2057 GTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAGTTTT 2116 Query 181901 GGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 181960 ||||| || ||||| ||||| ||| || | || |||| || |||||||| ||||| | Sbjct 2117 GGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGACATTA 2176 Query 181961 AATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATT 182020 ||||| || ||||||||||||||||||||| | | ||||||||| | || ||||||||| Sbjct 2177 AATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGCAATT 2236 Query 182021 CACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAA 182080 || |||| || || || |||||||| | | |||| || || || ||||||||| Sbjct 2237 CATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTTCCGT 2296 Query 182081 GCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGG 182140 || || | |||| |||| ||||||||||||||| | || ||||| || || || ||| Sbjct 2297 GCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTTTTGG 2356 Query 182141 TCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 182200 ||||| || || ||| | || ||| ||||| | ||||| || ||||||||| | || Sbjct 2357 TCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTTGTTC 2416 Query 182201 GTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 182260 ||||| || | |||||||||| ||| | || ||| | ||||| | || | || | Sbjct 2417 GTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAATTTA 2476 Query 182261 CGTGCTTATGACTTTGTATCCCAAGAAAT 182289 ||||| ||||| || ||||| |||||||| Sbjct 2477 CGTGCATATGATTTCGTATCACAAGAAAT 2505 >seq3158 Length=11629 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 182299 AGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCG 182358 |||||| || || || || || ||||| || || || ||||| || ||||| ||| | || Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 182359 TGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATT 182418 ||| ||| | || | || ||||| ||||| || |||| ||||||||||| || || Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 182419 ACCCAGAGGTAACGCACT 182436 ||| | || ||||| || Sbjct 121 ACCACGTGGAAACGCTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610368943016040