Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3544 598 5e-166 seq3157 372 4e-98 >seq3544 Length=2542 Score = 598 bits (662), Expect = 5e-166 Identities = 635/835 (76%), Gaps = 2/835 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 ||||||||||||||| |||||||||| ||| | |||||| | | ||| || || | Sbjct 1653 GGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACTAC-TGTATTTATTAT 1711 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || || ||||| ||||||||||| ||||| || || ||| | || |||||| | ||||| Sbjct 1712 TGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTC 1771 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| || || ||||||||||| || ||||||| || |||| | ||||| ||||| || Sbjct 1772 TTTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGG 1831 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | |||||||||||||| |||||||| || | | || |||||||| ||||| ||||| Sbjct 1832 TATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGG 1891 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 |||||| || || | | | ||| || | || ||||| | || || ||||| | | Sbjct 1892 TCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGA 1951 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| || | | | ||||| ||||||||||||||| ||| || || || || || Sbjct 1952 GTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCC 2011 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 ||| ||||||| | ||||||||| | | ||||| | ||||| ||||| || ||||| Sbjct 2012 TGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGA 2071 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||||| || ||||||||||| || ||| | || ||||||||||| || Sbjct 2072 TGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACA 2131 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 |||||| || ||||| || ||||||||| || || || || | || || || || || Sbjct 2132 TAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATT 2191 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 ||| || || |||||||||||| | || ||||| ||||| || | ||||| || || | Sbjct 2192 ATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAA 2251 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || ||| |||||| || ||||| |||||||||||||| |||||||| || || Sbjct 2252 CGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGC 2311 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 ||| ||||| ||||| |||||| | || ||||| |||||||| || |||||||| | Sbjct 2312 AGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTC 2371 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 |||||||||| |||| | || |||||||||||| | ||||| || || | ||||| Sbjct 2372 ATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTAT 2431 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 | || |||||||| ||||| || || |||||||| |||||||||||||| ||| Sbjct 2432 TTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGAT 2486 >seq3157 Length=2513 Score = 372 bits (412), Expect = 4e-98 Identities = 621/897 (69%), Gaps = 29/897 (3%) Strand=Plus/Plus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 ||||||||||| || ||||||| ||| || | || || ||||||||| |||| ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 ||||| | |||||| | ||| ||| || || || | |||| ||||| ||| ||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || ||||| |||||||| ||||| | ||| ||||||| | || || || || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 || |||| || |||||||| ||||| | | ||||||||| | | | |||||| Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||| ||||||||||||||| ||| |||||||| ||| | || || | ||| Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 170823 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATC 170882 ||| |||| | ||||| ||||| || || ||||| ||||| | |||||||| || Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 170883 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 ||| | ||| || | ||||| |||||| | || || || || || || || Sbjct 1994 GCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGC--TC 2051 Query 170943 TTCACTAGCATC---TTTC-TGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACC 170998 || | | || |||| | || || ||| ||||||| ||||||| || ||||| Sbjct 2052 TT--TTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACC 2109 Query 170999 ATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACAT 171058 || ||||| ||||| || || |||| || ||||| | |||||||| || ||| Sbjct 2110 TAGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTG 2169 Query 171059 TACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATG 171118 ||||| ||||||||||| |||||||||||||| || | ||||||| ||| | | | Sbjct 2170 GACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTC 2229 Query 171119 TGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGA 171178 ||| ||||||||||||||||| | || || | | |||||| | || || Sbjct 2230 TGCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGA------TGGAGATGGTGC 2283 Query 171179 TAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTA 171238 |||| || |||||||| ||| | || ||||| | ||||||||| || Sbjct 2284 TAAT---------------ACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTA 2328 Query 171239 CAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAA 171298 | | | |||||||| | || ||||| || || |||||| | ||||| ||||| || Sbjct 2329 TTCTTTTGTAACAGCAAATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAA 2388 Query 171299 AAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTAT 171358 | | | ||||||||| |||||||||||||||| || | ||| | |||| |||| Sbjct 2389 ACGTTGGTTACACTTCTTTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTAT 2448 Query 171359 AGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGAT 171415 ||| | || ||| ||||| | || | | ||||| ||||| ||||| ||||| || Sbjct 2449 TGGTGTAGTTGGTTTAGCATTAAATTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579186366175840