Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq3544 618 5e-172 seq3157 423 2e-113 >seq3544 Length=2542 Score = 618 bits (684), Expect = 5e-172 Identities = 694/926 (75%), Gaps = 2/926 (0%) Strand=Plus/Plus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 ||| || |||||| | || ||| | ||||| | || |||||||||| || || | Sbjct 1610 TTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTT 1669 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||||| ||| | || ||||||||| |||| || || | | || | ||||| | Sbjct 1670 AATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCAC 1728 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | ||||| || || || || |||||||| || || | ||||| | | || ||||||| Sbjct 1729 CTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACA 1788 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 |||| || ||||||| || | ||| |||| ||||||||||| | |||||||| || | Sbjct 1789 ACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAA 1848 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| || ||| | || || ||||| |||||||||||||||| |||| || | | Sbjct 1849 TTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCG 1908 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | || || |||||||||| | || || ||||| ||||| ||||||||||| | | Sbjct 1909 TTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCC 1968 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 |||||||||||||||| |||||| ||| || || || || || || ||||| || || Sbjct 1969 GTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTG 2028 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | |||||| | | || ||| ||||||||||| ||| ||||||| ||||| | || | Sbjct 2029 CTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTA 2088 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | || || || ||||| | |||| | || |||||||| || || || || || ||||| | Sbjct 2089 TTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACC 2148 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | ||||| ||||| || |||||||| ||||||||||| || ||| ||||||||| | Sbjct 2149 CATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATG 2208 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | || || ||||||||||| || | || || ||||||| |||||| ||| | Sbjct 2209 GTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTG 2268 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 ||||||| ||||| |||||||||||||| ||||||||||| || ||||| || ||||||| Sbjct 2269 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCG 2328 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 ||||||| || |||||||| ||||| || |||||||| || || || |||||||| | | Sbjct 2329 GTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAG 2388 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 |||| ||||||||||| | || |||||||| || | || | || || |||||||| | Sbjct 2389 CTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 2448 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 || | ||||| |||||||||||||| || | | ||| || |||||||| | |||| Sbjct 2449 ACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACA 2508 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCT 168786 | ||||| || || | ||||| ||| Sbjct 2509 CTTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 423 bits (468), Expect = 2e-113 Identities = 612/861 (71%), Gaps = 2/861 (0%) Strand=Plus/Plus Query 169301 GGGTGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGG 169360 || ||||| || || | || || ||||| || ||||||||||||||| | || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 169361 TCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACA 169420 ||||| || | ||| | || ||||| |||||||| |||| | ||| | || || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 169421 GCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAAC 169480 | ||||| || || ||||| || || ||| | ||| | || |||||||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 169481 TTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTA 169540 || | ||||| || || |||||| ||| | |||||| || || | | || || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 169541 TGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAAC 169600 |||||||| ||||||||||| ||||| ||| ||||||||||| || || || ||| Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 169601 TTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTG 169660 ||| ||||||||||||| | |||| | |||||||| |||||| | || |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 169661 GCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTA 169720 |||||| | || ||||||||||| || ||||| || || | || |||||| | Sbjct 1994 GCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTT 2053 Query 169721 TTTGTCAGTGTCTTTCTT-ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTC 169779 ||||| ||| |||||| || |||||| | || || || ||||| ||||| || Sbjct 2054 TTTGTTTCTGT-TTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 169780 CTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGAC 169839 ||||| || |||| || ||| | ||| | || || | ||||| || || |||||||| Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 169840 GTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGC 169899 || |||||||| || ||||||||||| || || | || || || ||| | |||||||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 169900 TATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959 || ||||||| |||||||| || || | | |||||| || || || |||||||| Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTT 2292 Query 169960 CAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 170019 | || ||| | | ||||| | |||||| || |||||| | || || ||||| || || Sbjct 2293 CCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTT 2352 Query 170020 CTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTT 170079 ||||| || || || ||| | || |||||||| || |||||| | || || || ||||| Sbjct 2353 TTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTT 2412 Query 170080 GTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAA 170139 ||| || || || | |||||||||| ||||||| | |||| | || | || Sbjct 2413 GTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAA 2472 Query 170140 TCTTCGTGCTTACGATTTCGT 170160 | | ||||| || |||||||| Sbjct 2473 TTTACGTGCATATGATTTCGT 2493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574447382461080