Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq3544 646 1e-180 seq3157 504 8e-138 seq3158 100 3e-16 >seq3544 Length=2542 Score = 646 bits (716), Expect = 1e-180 Identities = 700/925 (76%), Gaps = 2/925 (0%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 || || || ||| | ||| ||| | ||||| | || | |||||||| || ||| | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163903 ||||| ||||| | | ||||||| | |||| || || | | || | ||||| || Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 163904 CCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAA 163963 ||||| || || |||||||| ||||| || || ||||||| | | || |||||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 163964 CATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCAT 164023 ||| || ||||||| || |||| | || ||||| |||||| | ||||||||||| || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 164024 TTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGT 164083 ||||||||| || || | || |||||| | || ||||||||||||| |||| | |||| Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 164084 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCG 164143 | ||| || | |||||||| | || || |||||||||||||||||||| |||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 164144 TCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGC 164203 | | ||||||||||||||||| ||| ||||| || || || || || || || || Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 164204 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCAT 164263 || ||| | | || ||| ||||||||||||| || ||||| | ||||| | || || Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 164264 CTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCC 164323 ||||| || ||||| | |||| | || ||||||||||| || |||||||| |||||||| Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 164324 CTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164383 ||||| ||||| || |||||||| |||||||| ||||| | || ||| ||||| || Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 164384 TTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 164443 ||| | || |||||||| || |||||||||| || |||| || || ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 164444 TTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGG 164503 |||||| || ||||||||||||||||| |||||||| ||||| |||||||| ||||| || Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 164504 TCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 164563 |||| | || |||||||| ||||| || |||||||| ||||| || |||||||| | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 164564 TGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAA 164623 ||| ||||||||||| | || |||||||| || | ||| |||| || |||||||| || Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 164624 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164683 | | ||||| |||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACAC 2509 Query 164684 TTGGGCAGACGTTCTCAACCGCGCT 164708 |||||| ||| || | ||||| ||| Sbjct 2510 TTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 504 bits (558), Expect = 8e-138 Identities = 637/873 (73%), Gaps = 2/873 (0%) Strand=Plus/Plus Query 165188 GGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 165247 || ||||| || | | || || ||||| || || || || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 165248 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 165307 ||||| | | ||||| || |||||||||||||| |||| | ||| |||| || ||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 165308 ACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAAC 165367 || || | || |||||||||||| || || || || || ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 165368 TTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTC 165427 ||| | ||||||||||||||||| ||||| | ||||||||||||| | | | || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 165428 TGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCT 165487 ||||||||||| || ||||| ||||| | ||| ||| | || || || |||||| Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 165488 TTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTA 165547 ||| || || || || | || | ||| |||||||| ||||||||||| |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 165548 GCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 165606 |||||| ||| | || ||||| || || || |||||||| || | || || ||| | Sbjct 1994 GCACGT-TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCT 2052 Query 165607 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 165666 ||||||| || || | || ||||| | |||||||| |||||||||| || || Sbjct 2053 TTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 165667 TTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 165726 ||| || || ||||| || ||| | ||| || | || | ||||| || ||||||||||| Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 165727 CTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 165786 || ||||| |||||||||||||||||||| ||| | | ||||| ||| | |||||||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 165787 CATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846 || ||||||| |||||||| |||||||| | | ||||||| || | ||| |||||||| Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTT 2292 Query 165847 CAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTT 165906 | || ||| || | || |||| ||||||||||| || | || || ||||| ||||| Sbjct 2293 CCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTT 2352 Query 165907 CTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 165966 |||||||| || || ||| | || ||| |||||| | ||||| || ||||||||| | Sbjct 2353 TTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTT 2412 Query 165967 GTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 166026 ||| ||||| || | |||||||||| ||| | || ||| | ||||| | || | || Sbjct 2413 GTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAA 2472 Query 166027 CCTTCGTGCTTATGACTTTGTATCCCAAGAGAT 166059 | ||||| ||||| || ||||| ||||| || Sbjct 2473 TTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 >seq3158 Length=11629 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 166069 AGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCG 166128 |||||| || || |||||||| ||||| || ||||| ||||| || ||||| ||| |||| Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 166129 TGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCT 166188 ||||||| |||| | || ||||| ||||| || |||| |||||||| || ||| | Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 166189 GCCTAGGGGTAACGCGCT 166206 || | || ||||| || Sbjct 121 ACCACGTGGAAACGCTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556899383344440