Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3544 590 7e-164 seq3157 352 3e-92 >seq3544 Length=2542 Score = 590 bits (654), Expect = 7e-164 Identities = 665/890 (75%), Gaps = 0/890 (0%) Strand=Plus/Plus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||| ||||| | ||||| || ||| | |||||| | | || || || Sbjct 1653 GGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATT 1712 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 | || ||||| ||||||||||| ||||| || || ||| | || ||||| | |||||| Sbjct 1713 GGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCT 1772 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 || ||||| ||||||||||| || ||||||| || |||| | ||||| || || ||| Sbjct 1773 TTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGT 1832 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||||||||| || |||||||| || | |||| |||||||| || || |||||| Sbjct 1833 ATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGT 1892 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || || | | | ||| || | |||||||| | || || ||||| | || Sbjct 1893 CCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAG 1952 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| || | | | ||||||||| | || ||||| |||||| |||||||| ||| Sbjct 1953 TGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCT 2012 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 ||| | || || ||||||| ||| || | || || ||||||| ||||| || |||||| Sbjct 2013 GTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGAT 2072 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| ||||||| || ||||| ||||| || ||| | || ||||||||||| ||| Sbjct 2073 GGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACAT 2132 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 ||||| || ||||| || ||||||||| || || || || | ||||| || || ||| Sbjct 2133 AACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTA 2192 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCA 172461 || || || ||||| ||||| ||||| || |||||||| || | || || |||||| Sbjct 2193 TTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAAC 2252 Query 172462 GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 172521 ||||| ||| || ||||| ||||| |||||||||||||| |||||||| || ||| Sbjct 2253 GAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 2312 Query 172522 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGT 172581 || ||||| ||||| |||||| | || ||||| ||||||||||| |||||||| | Sbjct 2313 GCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCA 2372 Query 172582 CTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 172641 | |||||||| |||| | || |||||||||||| | ||||| || || | ||||| Sbjct 2373 TTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATT 2432 Query 172642 TGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAAC 172701 | || |||||||| ||| | ||||| ||||||||||||||||||||||||||| | | Sbjct 2433 TCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAA 2492 Query 172702 GGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGG 172751 ||| | || || |||| |||| || ||||| | || ||||| || Sbjct 2493 GGTCGTGTAATTAACACTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 >seq3157 Length=2513 Score = 352 bits (390), Expect = 3e-92 Identities = 616/894 (69%), Gaps = 23/894 (3%) Strand=Plus/Plus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 ||||||||||| || ||||||| ||| || | || || || |||||| | || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064 ||||| | |||||| | ||| |||||| ||| | | |||| ||||| ||||||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124 || || || ||||| |||||||| ||||| | || |||||| | ||||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184 |||||||| || ||||| || ||||| | | ||||||||| | | | |||||| Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 ||||| ||||||||||||||| || ||||||| ||| | || || || ||| Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 173245 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATC 173304 ||| |||| | ||||| ||||| || || ||||| ||||| ||||| ||||| || Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 173305 GCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 ||| | ||| || | ||||| |||||| | || || || || || || | Sbjct 1994 GCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTT 2053 Query 173365 TTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCA 173424 || | | || ||||| |||||| |||| || ||||||| || |||||| Sbjct 2054 TTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAGT 2113 Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484 || ||||| ||||| || || |||| || ||||| | |||||||| || ||| ||| Sbjct 2114 TTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGACA 2173 Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544 || ||||||||||| |||||||||||||| || | ||||||| ||| | || | ||| Sbjct 2174 TTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGCA 2233 Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGT 173604 ||||||||||||||||| | || || | | ||||| || || ||| Sbjct 2234 ATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAG------------ATGGAGATGGT 2281 Query 173605 AAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGT 173664 | | ||| |||||| | || ||| | || ||||| | ||||||||| ||| | Sbjct 2282 --GCT--AAT-----ACTTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCT 2332 Query 173665 ATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGA 173724 | | ||||| || | || ||||| || || |||||| | || ||||| || ||| | Sbjct 2333 TTTGTAACAGCAAATCGTTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGT 2392 Query 173725 TTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGT 173784 | ||||||||| | ||||||||||| || || | ||| | |||| | || ||| Sbjct 2393 TGGTTACACTTCTTTATGTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGT 2452 Query 173785 ATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGAT 173837 | || ||| | ||| |||| ||| | ||||| || || ||||| ||||| || Sbjct 2453 GTAGTTGGTTTAGCA-TTAAATTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588024362813360