Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq3544 603 1e-167 seq3157 489 2e-133 seq3158 87.8 2e-12 >seq3544 Length=2542 Score = 603 bits (668), Expect = 1e-167 Identities = 619/806 (77%), Gaps = 2/806 (0%) Strand=Plus/Plus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 ||||| || ||| |||| |||||| | |||||| | || |||||||||| || ||| | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||| ||||| || | ||||||| | |||| || || || | || | | ||| || Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 |||||| || || ||||||||||| || ||||| | ||||| | | || |||||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 ||| || ||||||| || ||||| |||| |||||||||||| | |||||||| || || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 |||||||| || | | ||||| ||||| || || |||||||||| |||| | | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 167387 TTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 167446 || ||| || | || || || | || ||||||||||||||||||||||| |||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 167447 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 167506 | | ||||||||||| |||||| ||| || || || ||||| || ||||| || ||| Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 167507 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTAT 167566 ||||||| | | || ||| |||||||||||||||| ||||| | |||||| | ||||| Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 167567 CTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 167626 |||||||| ||||| | |||| |||| ||||||||||| || |||||||| |||||||| Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 167627 CTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGG 167686 ||||| ||||| || |||||||| ||||| || ||||| | || ||| ||||| || Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 167687 TTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 167746 ||| | || || ||||| || |||||||||| || |||| || || ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 167747 TTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGG 167806 |||||| |||||||| |||||||| || || |||||||| || ||||| || |||||||| Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 167807 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGC 167866 ||| | || |||||||| || || || |||||||| || || | |||||||| || || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 167867 AGCATGGCCTGTTGTTGGTATCTGGT 167892 || ||||||||||| |||| |||| Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGT 2415 >seq3157 Length=2513 Score = 489 bits (542), Expect = 2e-133 Identities = 634/873 (73%), Gaps = 2/873 (0%) Strand=Plus/Plus Query 168477 GGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGG 168536 || ||||| || | | || || ||||| || || || || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 168537 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACT 168596 ||||| | | ||||| || |||||||||||||| |||| | ||| |||| || ||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 168597 GCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAAC 168656 | || || || |||||||||||| || || || || || ||| | || || || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 168657 TTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTC 168716 ||| | |||||||||||| ||| ||||| || ||||||||||||| | | | || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 168717 TGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCT 168776 ||||||||||| |||||||| ||||| | ||||||||| | || || || |||||| Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 168777 TTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTG 168836 ||| || || || || | || | ||| || ||||| ||||||||||| |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 168837 GCACGTCTCA-TCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 168895 |||||| ||| | || ||||| || || || |||||||| || | || || ||| | Sbjct 1994 GCACGT-TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCT 2052 Query 168896 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 168955 ||||||| || || | || ||||| | |||||||| |||||||||| || || Sbjct 2053 TTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 168956 TTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 169015 ||| || || |||| || ||||| ||| || | || | ||||| || ||||||||||| Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 169016 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGC 169075 | | ||||||||||||||||||||||| || ||| |||| || || || | |||||||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 169076 CATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135 |||||||||| |||||||| |||||||| | | ||||||| || || |||||||| Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTT 2292 Query 169136 CAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTT 169195 | || ||| || || || | ||| || |||||||| | || || ||||| ||||| Sbjct 2293 CCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTT 2352 Query 169196 CTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 169255 |||||||| || |||||| | || || |||||| | ||||| || ||||||||| | Sbjct 2353 TTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTT 2412 Query 169256 GTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 169315 ||| ||||| || | |||||||||| ||| | || ||| | ||||| | || | || Sbjct 2413 GTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAA 2472 Query 169316 CCTTCGTGCTTATGACTTTGTTTCCCAAGAGAT 169348 | ||||| ||||| || || || ||||| || Sbjct 2473 TTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 >seq3158 Length=11629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 169358 AGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCG 169417 ||||||||| || ||||| || ||||| || || || || || || || || ||| |||| Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 169418 TGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACT 169477 ||| ||| | || || || ||||||||||| || |||| ||||||||||| || | Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 169478 TCCCCGAGGTAATGCCCT 169495 || || || || || || Sbjct 121 ACCACGTGGAAACGCTCT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560582415252400