Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3544 628 3e-175 seq3157 509 2e-139 seq3158 125 8e-24 >seq3544 Length=2542 Score = 628 bits (696), Expect = 3e-175 Identities = 701/933 (75%), Gaps = 16/933 (2%) Strand=Plus/Plus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||| | ||| ||| | |||||| | || |||||||||| |||||| | Sbjct 1610 TTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTT 1669 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCC 164882 ||||| || ||| | | || || | | ||||||| || || || ||||| || Sbjct 1670 AATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 ||||| || ||||||||||| ||||| || || |||||||| || | ||||||||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 ||| || |||||||| | |||| |||| || || || || | |||||||| || || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 |||||||||||| | | || |||||||| || ||||||||||||||||| || | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGC---TACATGGGTCGTGAGTGGGAACTGTCTTA 165119 | ||| || |||||||| | |||| || |||||||||||||||||||| |||| Sbjct 1910 TTGCCATTTTATCATCGGTAT---TTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTT 1966 Query 165120 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGC 165179 ||| | ||||||||||||||||| ||||| ||| || ||||| ||||||||| Sbjct 1967 CCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCT 2026 Query 165180 CGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGG 165239 || || ||| | | || ||| |||||||||| ||| ||||||||||||||| | || Sbjct 2027 TGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGG 2086 Query 165240 TATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCA 165299 ||| ||||||||||| || | ||| | || |||||||||||||||||||| |||||||| Sbjct 2087 TATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCA 2146 Query 165300 TCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 165359 || ||||||||||| || |||||||| ||||| ||||| || | || ||||||||||| Sbjct 2147 CCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCA 2206 Query 165360 TGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTA 165419 ||| | || ||||| || || | || || || ||||||| || | ||| Sbjct 2207 TGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGC 2266 Query 165420 CGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTT 165479 ||||| || || || ||||||||||| || || |||||||| || || ||||| ||||| Sbjct 2267 TGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTT 2326 Query 165480 CGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 165539 ||||||| | ||||||||||| || || || ||||| || ||||| | |||||||| | Sbjct 2327 CGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTT 2386 Query 165540 CGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATT 165599 || || |||||||| || |||| |||||||||||| | ||| || || |||||||| Sbjct 2387 AGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATT 2446 Query 165600 CAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATC----- 165654 ||| | ||||| |||||||||||||| || |||| ||| || |||| || Sbjct 2447 TAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGAT--TC---ACAAGGTCGTGTA 2501 Query 165655 ATCCCTACTTGGGCTGACGTTCTGAACCGTGCT 165687 || |||||||||||| || | ||||||||| Sbjct 2502 ATTAACACTTGGGCTGACATTATTAACCGTGCT 2534 >seq3157 Length=2513 Score = 509 bits (564), Expect = 2e-139 Identities = 635/870 (73%), Gaps = 0/870 (0%) Strand=Plus/Plus Query 166155 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 166214 || ||||| || | ||||||| ||||| || || || || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 166215 TCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACT 166274 ||||| | | ||| | || |||||||||||||| |||| | ||| | || || ||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 166275 ACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAAC 166334 || || || || |||||||||||||||| | || ||| ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 166335 TTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTC 166394 ||| | ||||||||||||||||| ||||| || ||||||||||||| || | | || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 166395 TGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCC 166454 ||||||||||| || ||||| ||||| | ||||| ||| | || || |||||||| Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 166455 TTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATC 166514 ||| || || || ||| | |||| || |||||||| |||||||| || |||||||| Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 166515 GCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTC 166574 || ||| |||| |||||||| || || ||||| || ||||| | || |||||| | Sbjct 1994 GCACGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTT 2053 Query 166575 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCT 166634 || ||| ||| || | || ||||| | |||||||| |||||||||| || || | Sbjct 2054 TTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAGT 2113 Query 166635 TTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACA 166694 || || || |||| || ||||| ||| | | || | ||||| || || ||||||||| Sbjct 2114 TTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGACA 2173 Query 166695 CTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCC 166754 | || |||||||||||||||||||| || ||| || | ||||| ||| | |||||||| Sbjct 2174 TTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGCA 2233 Query 166755 ATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTC 166814 || ||||||| |||||||| || ||||| | | ||||||| || || ||||||||| Sbjct 2234 ATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTTC 2293 Query 166815 AAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTAT 166874 || || || | || |||| |||||||||||||| | || |||||||| || | | Sbjct 2294 CGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTTT 2353 Query 166875 TGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTG 166934 |||||||| || || ||| | || ||| |||||| | ||||| || ||||||||| || Sbjct 2354 TGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTTG 2413 Query 166935 TTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAAC 166994 || ||||| || | ||||| |||| ||| | || ||| | ||||| | || | || Sbjct 2414 TTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAAT 2473 Query 166995 CTTCGTGCTTATGACTTTGTTTCCCAAGAA 167024 | ||||| ||||| || || || |||||| Sbjct 2474 TTACGTGCATATGATTTCGTATCACAAGAA 2503 >seq3158 Length=11629 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 167036 AGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCG 167095 ||| |||||||| |||||||| |||||||| || || ||||| || ||||||||||| || Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 167096 TTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCT 167155 | |||||||||| || || ||||||||||| | | ||||||||||| |||||| | Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 167156 TCCTAGAGGTAACGCTCTCTAA 167177 || | || |||||||| ||| Sbjct 121 ACCACGTGGAAACGCTCTTTAA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563635075930240