Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq947 127 5e-24 seq583 113 1e-19 seq584 100 6e-16 >seq947 Length=48402 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||||| || || | |||||| || Sbjct 32248 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCCTCC 32189 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 32188 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 32129 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| || ||||| || || || | |||||| Sbjct 32128 ATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTGATCGTCTTG 32069 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || |||| || || || || Sbjct 32068 CCAGTCAGGGTCTTCACAAA 32049 Score = 114 bits (126), Expect = 3e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || ||||| ||||| || || | ||| || || Sbjct 31715 ACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCCTCC 31656 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 31655 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 31596 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| ||||||||||| ||||| || || || | ||||| Sbjct 31595 ATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTG 31536 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCA 195139 || |||| || || || || | |||| Sbjct 31535 CCGGTCAGGGTCTTCACAAAGATCTGCA 31508 >seq583 Length=2907 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||||| || || | ||| || || Sbjct 2742 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCGTCCTCC 2801 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || ||| |||| || || || || Sbjct 2802 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGAGTGCCCTCCTTATCCTGG 2861 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || ||| || |||||||||||||| || Sbjct 2862 ATCTTGGCCTTCACATTCTCAATGGTGTCTGA 2893 >seq584 Length=13061 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || |||||||| || |||||||| || || || ||||| || || ||||| || || Sbjct 1 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 60 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| || || ||| ||| || |||||||||||||| || ||||| || || |||| Sbjct 61 GTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAAT 120 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 ||||| || |||| || || || || | |||| Sbjct 121 GGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109429700184317