Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3544 643 1e-179 >seq3544 Length=2542 Score = 643 bits (712), Expect = 1e-179 Identities = 701/926 (76%), Gaps = 6/926 (1%) Strand=Plus/Minus Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 ||||| |||| | || ||||| || || | ||||| ||| ||| |||| Sbjct 2533 GCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCTACAACTGAT 2474 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || |||||||| || || || | ||||||||||| || || ||| | ||||| ||| Sbjct 2473 TGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 2414 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| | || || ||||||||||| || || ||||| | |||||| ||||| || Sbjct 2413 CAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAGTTGTTAAAA 2354 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||||| ||||| || | ||||||||||||||||||||| ||||| || || |||||| Sbjct 2353 GAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATGTTGTAAGTT 2294 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || |||||||||||||| ||||||||| ||| || | ||||| |||||||| || Sbjct 2293 TCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTAGTTTCACGA 2234 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || ||||||||||| || | |||||||||||| ||||| |||| | ||||| |||||| Sbjct 2233 ATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCACCAAATACA 2174 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 |||||||| || | |||||| || || |||||||||||||||||||| || ||||| ||| Sbjct 2173 CCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCTTGGAATACA 2114 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | |||| | ||||| || || || ||||| | ||||| |||||||| ||||||||||| Sbjct 2113 ATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAAGAACCTTGA 2054 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 |||| ||| || | || |||||||||| || || || || ||||| || ||||| ||| Sbjct 2053 CCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAATAAGCTACA 1994 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGC- 84631 |||||| ||||||||||| | ||| | ||||||||||| ||||||||||| ||||| Sbjct 1993 GCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCCATATAAGCG 1934 Query 84632 -AAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCC 84690 |||| ||| || | || || | || | | ||| ||||| ||||| ||||||| || Sbjct 1933 CAAAT--ACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTATATAACC 1876 Query 84691 ATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGG 84750 ||||||| | || ||||||||||| || ||||| || | |||||||||||| || | Sbjct 1875 ATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCATTTGAAG 1816 Query 84751 ATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCT 84810 |||| | ||||||| ||| |||||||| ||||| | | |||||| | ||||||| Sbjct 1815 TAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGATACTGGCT 1756 Query 84811 CACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACA 84869 |||||||||| |||||||| || || |||||| ||| || |||| || || |||| | Sbjct 1755 CACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAATACAGT-A 1697 Query 84870 GTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTG 84929 || || | | || ||| |||||||| | | ||||||||||| | || | |||||| Sbjct 1696 GTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAAACGGTTT 1637 Query 84930 TTAGTGGAGGTGACCCAATCACAGAA 84955 | |||| || | ||| ||||| || Sbjct 1636 TCAGTGCTAGTAATCCACTCACAAAA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571247528501080