Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq947 122 7e-23 seq584 98.7 8e-16 seq1585 84.2 2e-11 seq583 82.4 6e-11 >seq947 Length=48402 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||||| ||| || || ||| || || || |||||||||| || | ||| | Sbjct 33935 CGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGACCA 33876 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| || ||||| ||||| ||||| || || | ||||| |||||||||| Sbjct 33875 TCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 33816 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | | ||||| | ||||||||| | ||| || Sbjct 33815 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGACTCCACCTCAAGCGTGATG 33756 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || |||||||||||||| Sbjct 33755 GTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 33721 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || ||||| ||| || || || ||||| || | || | || Sbjct 32257 AGGCGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 32198 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| || || | ||| | ||||||| Sbjct 32197 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCC 32138 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||||| ||||||||||| ||| Sbjct 32137 TTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTG 32078 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||| || || ||||| ||||| || Sbjct 32077 ATCGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGTAT 32040 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || ||||| || | || | || Sbjct 33480 AGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 33421 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| ||||| ||||| || || | || | ||||||| Sbjct 33420 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 33361 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || || | ||||||||||| ||| Sbjct 33360 TTGTCCTGAATCTTGGCCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCCAGCGTG 33301 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCA 48765 || || || || ||||| || || ||||||||||||| Sbjct 33300 ATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTGCA 33264 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || ||||| || | || | || Sbjct 31724 AGGCGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 31665 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| |||||||| ||||| ||||| || || | || | ||||||| Sbjct 31664 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 31605 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| ||| Sbjct 31604 TTGTCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCCAGCGTG 31545 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCA 48765 || || || || |||| || || ||||| ||||||| Sbjct 31544 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCA 31508 >seq584 Length=13061 Score = 98.7 bits (108), Expect = 8e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| || || || ||||| ||||| || || | ||| | |||||||||| Sbjct 2 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 61 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || ||| | | | ||||||| ||||||||||| |||||| Sbjct 62 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCTGACGACTCCACCTCCAGCGTAATG 121 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCA 48765 || || || |||| || || ||||||||||||| Sbjct 122 GTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCA 155 >seq1585 Length=27689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 9139 TGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCC 9198 || ||||||||||| || |||||||| || | ||| |||||||| | ||||| ||||| Sbjct 22450 TGGTTGAACAGCACAACACCCACGTTGCCACGGTAGTCCTCATCCACAACACCCGCACCA 22391 Query 9199 ACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 ||| ||||||| ||| || || || |||||||| || || Sbjct 22390 GTGTCAATGAAGTTCTTCACTGCCAGGCCAGAGCGAGGTGC 22350 >seq583 Length=2907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || |||||| ||| || || || ||||| || | Sbjct 2723 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 2782 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || || || ||||| ||||| || || | ||| Sbjct 2783 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGG 2842 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | ||||||| |||||| Sbjct 2843 AGTGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGACGACTCCAC 2902 Query 48719 CTCCA 48723 ||||| Sbjct 2903 CTCCA 2907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380920649586273