Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3544 659 0.0 >seq3544 Length=2542 Score = 659 bits (730), Expect = 0.0 Identities = 673/878 (77%), Gaps = 0/878 (0%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||| ||||| || ||||| ||| || | ||||| | ||| || || | Sbjct 1651 TCGGTTGGTTTGGTGTTTTAATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTA 1710 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 ||| || ||||| |||||||| || ||||| ||||||||| | || || || |||||| Sbjct 1711 TTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTT 1770 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | | || ||||||||||| || |||||||| | |||||| |||||||||||||| Sbjct 1771 CTTTATTATACGGTAACAACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTG 1830 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | |||||||| || || |||||||| || | | || || ||||| ||||| |||| Sbjct 1831 GTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTG 1890 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | | || | ||| || | ||||| || || || |||||| Sbjct 1891 GTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTG 1950 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 ||||||||||||||| ||| ||||||||||||||||||||| ||| || || || || | Sbjct 1951 AGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTC 2010 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | ||| |||| || | ||||| ||| | | || ||| |||||||||||||||| |||| Sbjct 2011 CTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTG 2070 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||||||||||||||| || | |||| | || ||||||||||| | Sbjct 2071 ATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAAC 2130 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 | |||||||| |||||||| ||||| ||| |||| || || |||||||| ||||||||| Sbjct 2131 ATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCAT 2190 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | ||| ||||||||| ||||| | || |||||||||||||| | ||||||||||| Sbjct 2191 TATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAA 2250 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || || ||| ||||| || ||||| ||||||||||| ||||||||||| |||| Sbjct 2251 ACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 2310 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 | ||||| || ||||| ||||| || || ||||| ||||| ||||| |||||||| |||| Sbjct 2311 CAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTT 2370 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 || | |||||||| | ||||| | ||||| || || || ||||||||||| | ||| Sbjct 2371 CATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTA 2430 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAG 163378 | |||||||||||||| ||| | ||||| ||||||||||||||||| || || || || Sbjct 2431 TTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCAC 2490 Query 163379 GTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAAC 163416 ||| || ||| |||||||| || || ||||| Sbjct 2491 AAGGTCGTGTAATTAACACTTGGGCTGACATTATTAAC 2528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553059558592440