Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2126 98.7 2e-15 seq1200 93.3 8e-14 >seq2126 Length=41412 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212921 GAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTC 212980 ||| || || |||||||||| | | ||| | ||| || ||||||||||| | || ||| Sbjct 20983 GAACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTC 20924 Query 212981 GTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTT 213040 |||||| ||||| ||||| ||| ||| ||||||||||| |||||||| || ||| Sbjct 20923 GTTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCGAGTT 20864 Query 213041 CCTCACTCCGTGCT 213054 | ||| ||||||| Sbjct 20863 GCGCACGCCGTGCT 20850 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||| |||||| ||| |||||| ||||||||||| ||||| ||||| ||| | ||| Sbjct 18826 GTGCAGAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTGGACTT-GCGGTTGCA 18768 Query 213606 -GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCA 213654 || ||||||||||||||| ||||| || ||||| | ||||| | ||| Sbjct 18767 CGAGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCACCTGGGCCTCCA 18718 >seq1200 Length=20974 Score = 93.3 bits (102), Expect = 8e-14 Identities = 121/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 48320 AGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC--- 48376 ||||||||||| ||||||||||||| | ||||| |||||| |||| ||||||| Sbjct 4622 AGCGCCCAGTCCGCCTTCTTCTTGACGACTGGCACCGTCTCGGTGGCGTGGAAGAGGCGG 4563 Query 48377 TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAG 48436 ||||| ||| | | |||| | || | |||||| | ||||||||| ||| Sbjct 4562 TTCTT---CTCGGCAGAGTCCTTGATGTACGACTCCAGCAGCAGGGAGTACATCTCGGAG 4506 Query 48437 TGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 || | ||||| || || |||||||| ||||||||||| | ||||| Sbjct 4505 TGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCT 4460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931490287171840