Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2126 102 2e-16 seq1364 98.7 2e-15 >seq2126 Length=41412 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 221763 CTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGG 221822 |||| ||||||||| |||||||||||||||||||| | || || |||||||| ||| Sbjct 18828 CTGTGCAGAGGTTGGAGCACTTGATGGTCCCCAGGTTCTGCTGGTTGGACTTGCGGTTGC 18769 Query 221823 CAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCA 221873 | ||||||||||||||| ||||| ||| ||||||| ||| ||| ||| Sbjct 18768 ACGAGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCCACCTGGGCCTCCA 18718 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221128 GAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTC 221187 ||| || || |||||||||| | | ||| | ||| || ||| | || || | || ||| Sbjct 20983 GAACTCCCCAGAGAGCACCCGGCGCACGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTC 20924 Query 221188 GTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 |||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||| Sbjct 20923 GTTGTTGCCCAGGATCTGGCTGGTGGAGGCGGTGGGCATGGGGGCCACCAGCAGCGAGTT 20864 Query 221248 GCGCA 221252 ||||| Sbjct 20863 GCGCA 20859 >seq1364 Length=60691 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/148 (77%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 |||||| ||||||||| ||||||| |||| || ||||||| ||| ||||| Sbjct 44625 AAGGCGGCCTGGGCCATGCGGTGGATCTGCAGCG---GCAAGACGTTTGCTGAGAGGCTG 44681 Query 25885 GTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 || || ||||| ||| |||||||||||| |||||||| || || ||| |||||||||| Sbjct 44682 GTGGCGTTTGCGTGC-GTGGAGGGCATCCACTTCAGCGGCTCCTTCTGC-GCCATCTTCT 44739 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGG 25970 |||| ||| |||||| | |||||||| Sbjct 44740 GGCTTAAGAAGAAGGCCATGATGCCCGG 44767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928802409845440