Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq3544 648 0.0 seq3157 459 3e-124 seq3158 91.5 2e-13 seq3155 91.5 2e-13 >seq3544 Length=2542 Score = 648 bits (718), Expect = 0.0 Identities = 698/924 (76%), Gaps = 0/924 (0%) Strand=Plus/Plus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||| | ||| || | || || || || |||| |||||||| ||| | Sbjct 1610 TTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTT 1669 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 ||||| || || | | | || || | | || |||| | || ||||||| || Sbjct 1670 AATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATTGGTTTTATTGCTGCACC 1729 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 |||||| || || || || ||||| || ||||| | || ||| | | ||||||||||| Sbjct 1730 TCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAA 1789 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||| || ||||||| || |||| | || || || ||||| | ||||||||||| || Sbjct 1790 CATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAAT 1849 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| ||||| | || || ||| | || ||||||||||||||||| | | || Sbjct 1850 TTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGT 1909 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 || ||| || || | || | | ||||||||||||||||| ||||||||||||| ||| Sbjct 1910 TTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCG 1969 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || ||||||||||||||| ||| || || || |||||||| || |||||| ||| Sbjct 1970 TTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGC 2029 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 ||||||| || | || ||| | ||||||||||| || ||||||||||||||| | ||||| Sbjct 2030 TGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTAT 2089 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 || ||||| ||||| | ||| |||| ||||| || || || |||||||| |||||||| Sbjct 2090 TTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCC 2149 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 |||||||||||||||||||||||||| || || || || | ||||| || |||||||| Sbjct 2150 ATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGG 2209 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 |||| | || |||||||| || ||||||| || || |||| ||| ||| ||| ||| Sbjct 2210 TTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGG 2269 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||| || Sbjct 2270 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGG 2329 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| || || ||||||||||| ||||||||||| ||| | || || ||||| | || Sbjct 2330 TCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGC 2389 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| |||||||| || | || ||||| || || | || | || || ||||| || || Sbjct 2390 TGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 2449 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | || ||||||||||||||||| || || | || |||||| || || | ||||| Sbjct 2450 CTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACAC 2509 Query 9147 CTGGGCAGACGTACTTAACCGCGC 9170 ||||| ||| | ||||||| || Sbjct 2510 TTGGGCTGACATTATTAACCGTGC 2533 >seq3157 Length=2513 Score = 459 bits (508), Expect = 3e-124 Identities = 623/869 (72%), Gaps = 0/869 (0%) Strand=Plus/Plus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 ||||||||||| |||| || ||||| || || |||||||| || || || |||||| Sbjct 1637 TGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGGTCT 1696 Query 9872 GGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACG 9931 || || | ||||| || ||||||||||||||| |||||| ||| |||| || ||||| Sbjct 1697 GGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACTACA 1756 Query 9932 TTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTC 9991 ||||| || |||||| ||||| ||| | || || || | || ||| ||||| Sbjct 1757 TTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAATTTT 1816 Query 9992 CTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 10051 | || ||||| || || || || ||| || ||||||||||||| | | | |||||| Sbjct 1817 TTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTTTGG 1876 Query 10052 GGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTT 10111 |||||||| | || || ||||| || ||| || | || || || ||||||||| Sbjct 1877 GGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCTTTT 1936 Query 10112 GTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCG 10171 || || || || | || | | | || || |||||| | || || ||||| | || Sbjct 1937 ACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATTGCA 1996 Query 10172 AGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTT 10231 | | | | ||| || ||||| || || || |||||||| | ||| |||||| ||||| Sbjct 1997 CGTTCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCTTTTT 2056 Query 10232 GTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTC 10291 || ||||||| | || || ||| | || || ||| ||||||| ||||| || ||||| Sbjct 2057 GTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAGTTTT 2116 Query 10292 GGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTC 10351 || || || ||||| ||||| ||| || | || |||| || |||||||| ||||| | Sbjct 2117 GGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGACATTA 2176 Query 10352 AATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATC 10411 ||||| || ||||||||||| ||||||||| | | || || || || || || ||||| Sbjct 2177 AATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGCAATT 2236 Query 10412 CACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAA 10471 || || | || |||||||| || |||| | ||||||| || || || |||||| Sbjct 2237 CATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTTCCGT 2296 Query 10472 GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 10531 |||||| | || |||| |||||| |||||||| | || || || || ||||| ||| Sbjct 2297 GCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTTTTGG 2356 Query 10532 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 10591 || || || ||||| | |||||| |||||||| ||| | || ||||||||| |||| Sbjct 2357 TCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTTGTTC 2416 Query 10592 GTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT 10651 || || || | |||||||||| | ||||||| | ||||| | || | ||| | Sbjct 2417 GTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAATTTA 2476 Query 10652 CGTGCTTACGATTTTGTATCTCAAGAGAT 10680 ||||| || ||||| ||||| ||||| || Sbjct 2477 CGTGCATATGATTTCGTATCACAAGAAAT 2505 >seq3158 Length=11629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 10690 AGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCG 10749 |||||||||||||||||| || |||||||| || ||||| || | || || ||| |||| Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 10750 TGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTT 10807 ||| |||||||| | |||||||| || |||| |||| ||||| || || ||| Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTT 118 >seq3155 Length=10462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 15398 ATATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTT 15457 ||||||||| ||||||||||||||||||| |||| ||||||| ||||| | | |||||| Sbjct 5010 ATATCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAAGTCGCAGGTT 4951 Query 15458 CAAATCCTGTATTCCCGA 15475 | |||||||| |||||| Sbjct 4950 CGAATCCTGTCATCCCGA 4933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516456429144000