Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq3544 636 2e-177 seq3157 475 4e-129 seq3158 100 3e-16 seq3155 84.2 2e-11 >seq3544 Length=2542 Score = 636 bits (704), Expect = 2e-177 Identities = 700/932 (75%), Gaps = 0/932 (0%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||| | || ||||| || ||||| | || | |||||||| || || | Sbjct 1611 TTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTA 1670 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCC 160995 |||||||| || | | || || | | || || |||| || ||| ||| || Sbjct 1671 ATGATTCCTACTTTATTAACAGCAACTACTGTATTTATTATTGGTTTTATTGCTGCACCT 1730 Query 160996 CCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAAC 161055 ||||| || || || || || ||||| || || | ||||| | | || || |||||| Sbjct 1731 CCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAAC 1790 Query 161056 ATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATC 161115 || || |||||||| |||| ||| |||| || ||||| ||| ||||||||||||| || Sbjct 1791 ATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAATT 1850 Query 161116 TGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTG 161175 |||||||| || | ||||||||| | || ||||||||||||| |||| | | || Sbjct 1851 TGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGTT 1910 Query 161176 TTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGT 161235 | ||| || | || || || | ||||| ||||||||||||||||||||||||| |||| Sbjct 1911 TGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCGT 1970 Query 161236 CTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCA 161295 | || |||||||||||||| ||||| || || |||||||| ||||| || ||| Sbjct 1971 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCT 2030 Query 161296 GTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATC 161355 || ||| | | || ||| |||||||||||||||| ||||||| |||||| | || || Sbjct 2031 GTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTATT 2090 Query 161356 TCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCC 161415 |||||||| ||||| | |||| |||| ||||||||||| || ||||| || |||||||| Sbjct 2091 TCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 2150 Query 161416 TTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGT 161475 ||||| ||||| || || || ||||| ||||| ||||| | || ||| ||||| ||| Sbjct 2151 TTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGGT 2210 Query 161476 TCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGT 161535 || | || || ||||| || |||||||||| || |||||||| || ||| |||| Sbjct 2211 TCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGGT 2270 Query 161536 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGT 161595 ||||| ||||||||||||||||| || |||||||||||||| || ||||| ||||||||| Sbjct 2271 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGGT 2330 Query 161596 CGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCT 161655 ||| | ||||||||||| ||||| || |||||||| || || | |||||||| | ||| Sbjct 2331 CGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGCT 2390 Query 161656 GCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAAC 161715 |||||||||||||| | || ||||||||||| | || | || |||||||| ||| Sbjct 2391 GCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 2450 Query 161716 CTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACC 161775 | || || |||||||||||||| || | || ||| || ||| || || ||||| Sbjct 2451 TTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACACT 2510 Query 161776 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGG 161807 ||||| ||| || | ||||||||| ||||| Sbjct 2511 TGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 >seq3157 Length=2513 Score = 475 bits (526), Expect = 4e-129 Identities = 635/882 (72%), Gaps = 8/882 (1%) Strand=Plus/Plus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || |||||||| | ||||||| ||||| | ||||| || || || || || ||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 162171 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACT 162230 ||||| | | ||||| || |||||||||||||| |||| | ||| |||| || ||| Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 162231 ACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAAC 162290 || || || || |||||||||||| ||| | || || || ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 162291 TTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTA 162350 ||| | ||||||||||||||||| ||||| | ||||||||||||| | | | || Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 162351 TGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACT 162410 ||||||||||| | ||||| || || | || ||||| ||| | || || || ||| || Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 162411 TTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTG 162470 ||| || || || || | |||| ||||| ||||| |||||||| || |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 162471 GCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGC 162526 ||||| || ||| |||||||||| || || ||||| || |||| || ||||| Sbjct 1994 GCACGT----TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGC 2049 Query 162527 TGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACC 162586 | | || ||| |||||| | || || || || || ||||| ||||| || ||||| Sbjct 2050 TCTTTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACC 2109 Query 162587 GTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTG 162646 || || || ||||| || ||||| ||| | | || ||||||| || |||||||| Sbjct 2110 TAGTTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTG 2169 Query 162647 GACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTC 162706 ||| ||||||| ||||| |||||||| || || ||| | | ||||| ||| | || || Sbjct 2170 GACATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTC 2229 Query 162707 TGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACAC 162766 ||| |||||||| | ||||| |||||||| || | |||||||| || || || || Sbjct 2230 TGCAATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATAC 2289 Query 162767 TTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCG 162826 ||| || ||| || | ||||| | |||||||| ||||| | || || || || || Sbjct 2290 TTTCCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCG 2349 Query 162827 CTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTAT 162886 || ||||| || ||||| ||| | |||||| ||| || |||||||| || |||||||| Sbjct 2350 TTTTTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTAT 2409 Query 162887 GCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCT 162946 | | || ||||| || | ||||| |||| ||| |||| ||| | |||| | || | Sbjct 2410 GTTGTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATT 2469 Query 162947 CAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGC 162988 ||| | ||||| || || || ||||| |||||| ||||||| Sbjct 2470 AAATTTACGTGCATATGATTTCGTATCACAAGAAATTCGTGC 2511 >seq3158 Length=11629 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 162992 AGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCG 163051 |||||| ||||| ||||| || |||||||| || || ||||| | ||||| || |||| Sbjct 1 AGAAGATCCTGAATTTGAAACTTTCTATACTAAAAATATTCTATTAAATGAGGGTATTCG 60 Query 163052 AGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTT 163111 || ||| | || | |||||||||||||| || |||| |||||||| ||||| || Sbjct 61 TGCTTGGATGGCTTCTCAAGACCAACCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 120 Query 163112 GCCAAGAGGCAACGCTCT 163129 ||| | || |||||||| Sbjct 121 ACCACGTGGAAACGCTCT 138 >seq3155 Length=10462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| || ||||||| || | |||||||||||||| Sbjct 5006 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAAGTCGCAGGTTCGAA 4947 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 4946 TCCTGTCATCCCGA 4933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547722202187160