Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3544 545 7e-151 >seq3544 Length=2542 Score = 545 bits (604), Expect = 7e-151 Identities = 692/952 (73%), Gaps = 0/952 (0%) Strand=Plus/Minus Query 17886 CCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCT 17945 ||||||||||| | ||| | | ||||||||| || | || | ||| | || Sbjct 2542 CCAAGGTTAGCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCT 2483 Query 17946 ACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATA 18005 |||| ||||||||||||||||| || || | ||||| |||||||| || || || | | Sbjct 2482 ACAACTGATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAA 2423 Query 18006 GAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA 18065 | || | ||| || || || ||||||||||| || ||||| |||| | Sbjct 2422 GCAGTGAACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAG 2363 Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 |||||||| |||||| ||||| || | | || |||||||| ||||| ||||| || Sbjct 2362 TTGTTAAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATG 2303 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 || || || ||||||||||| || ||||| || ||| ||| ||| || ||||| Sbjct 2302 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTA 2243 Query 18186 GTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 18245 ||||| | |||||| || ||||| || | || |||||||||| ||||| | ||| Sbjct 2242 GTTTCACGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCA 2183 Query 18246 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCT 18305 || ||||| || |||||||| ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 2182 CCAAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCT 2123 Query 18306 TGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAA 18365 |||||||| | |||||||||||||||||| |||||| | ||||||||||||||| ||| Sbjct 2122 TGGAATACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAA 2063 Query 18366 CTCCCTTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| || | ||| |||| | ||||| | | ||||| ||||| || || ||| Sbjct 2062 GAACCTTGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAA 2003 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 ||||| ||| ||||| || |||||||||| | || ||||||||| | || ||| Sbjct 2002 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCC 1943 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 || ||||| || ||||||| ||| ||| | || || | ||| || || || |||||| Sbjct 1942 ATATAAGCGCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTA 1883 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| ||||| | | ||||||||||| |||||||||||||| | ||| || || Sbjct 1882 TATAACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCA 1823 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 || || | || | || || || | || |||||||| || || | ||| | ||||| Sbjct 1822 TTTGAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGAT 1763 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 || |||||||| |||||||| || || || ||||| ||||||| ||| |||| | |||| Sbjct 1762 ACTGGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAAT 1703 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | |||| ||| ||||| | | ||| ||||| | || |||||||| || | ||| | Sbjct 1702 ACAGTAGTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAAA 1643 Query 18786 CGGTTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCAGTTGCTATTTG 18837 ||||| | || || |||| ||| ||||| |||| |||| |||| ||| Sbjct 1642 CGGTTTTCAGTGCTAGTAATCCACTCACAAAAACGAGCCCAAAGGCTAGTTG 1591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151311839496194