Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3544 542 4e-149 seq3157 450 2e-121 >seq3544 Length=2542 Score = 542 bits (600), Expect = 4e-149 Identities = 671/925 (73%), Gaps = 2/925 (0%) Strand=Plus/Minus Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 ||| ||||| | || ||| ||||| ||||| | |||||||| || ||| | | || Sbjct 2534 AGCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCTACAACTGA 2475 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAA 103353 |||||||||||||| ||||| | ||| || ||||| || || ||| | || ||||| Sbjct 2474 TTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAA 2415 Query 103354 CCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAA 103413 ||| |||| || || || | |||||||| || Sbjct 2414 CCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAGTTGTTAAA 2355 Query 103414 TGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGT 103473 || || |||||||| || |||||||||||||| || ||||| || ||||||||||| || Sbjct 2354 AGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATGTTGTAAGT 2295 Query 103474 CTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACG 103533 ||||| ||||| ||||| ||||||||| ||| |||||| ||||||| || ||||| Sbjct 2294 TTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTAGTTTCACG 2235 Query 103534 AACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGAC 103593 || || || || || || | ||||| ||||||||| || | ||||||||| || || Sbjct 2234 AATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCACCAAATAC 2175 Query 103594 TCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGAC 103653 |||||||| || ||||||||||| |||||||| || ||||||||||| |||||||| || Sbjct 2174 ACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCTTGGAATAC 2115 Query 103654 CAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTG 103713 | |||| | ||||| || || |||||||| ||||||||| |||| || || |||||||| Sbjct 2114 AATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAAGAACCTTG 2055 Query 103714 ACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGAC 103773 ||| | ||||| | | |||||| || ||||| || |||||||| || || || || Sbjct 2054 ACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAATAAGCTAC 1995 Query 103774 ACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGC 103833 | |||||| || ||||| || | |||| | || | |||||||||||| |||||||| || Sbjct 1994 AGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCCATATAAGC 1935 Query 103834 ATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCA 103893 | || || |||| || ||| | || | | |||| |||||||||||||||| | ||| Sbjct 1934 GCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTATATAACCA 1875 Query 103894 CTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGA 103953 || || | || || ||||||||||| || |||||||| | |||||| || || || | Sbjct 1874 TTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCATTTGAAGT 1815 Query 103954 GGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTC 104013 |||| || ||||||| || |||||||||||||| | | ||||| | || || || Sbjct 1814 AGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGATACTGGCTC 1755 Query 104014 ACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGG 104072 ||| || || || ||||| || |||||||| || | ||| ||| || || ||| | | Sbjct 1754 ACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAATACAG-TAG 1696 Query 104073 TTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGT 104132 |||| | || | ||| || ||||| | ||||| |||||||| | || | |||||| | Sbjct 1695 TTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAAACGGTTTT 1636 Query 104133 TTGTCGATGTAACCCACTCGCAGAA 104157 || |||| |||||| || || Sbjct 1635 CAGTGCTAGTAATCCACTCACAAAA 1611 >seq3157 Length=2513 Score = 450 bits (498), Expect = 2e-121 Identities = 624/873 (71%), Gaps = 8/873 (1%) Strand=Plus/Minus Query 101857 ATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATG 101916 || ||||| ||||| || ||||| ||||| | || | || | ||||| | ||| || Sbjct 2505 ATTTCTTGTGATACGAAATCATATGCACGTAAATTTAATGCTAAACCAACTACACCAATA 2446 Query 101917 GAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTA 101976 | ||| |||| ||||| | || ||||| || | ||||||||| || ||||| | ||| Sbjct 2445 GCACTCATCCAAAGACCAGTTACTGGAACGAACAACATAAAGAAGTGTAACCAACGTTTA 2386 Query 101977 TTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAA 102036 ||| ||| || | |||||| ||||||||||| ||||| |||||||| || | ||||| Sbjct 2385 TTAGAAAAAGCTACACCAAAAATTTGAGACCAAAAACGATTTGCTGTTACAAAAGAATAG 2326 Query 102037 GTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCA 102096 || ||||| ||||||| | | || || |||||| || || ||| ||||||||| Sbjct 2325 GTTTCTTCTGCTTGTGTTGGGTTAAAAGCACGGAAAGTATTAGCACCATCTCCATCTTCA 2266 Query 102097 TACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATA 102156 | ||||| || || || || |||| || ||||| || || ||||| || || | | | Sbjct 2265 AAAAGAGTATTTTCTACTGTTGCACCATGAATTGCAGAAAGAAGTGCGCCACCTAAAACA 2206 Query 102157 CCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAG 102216 || ||||||||||||||||| ||||| || | ||||||||||| || || || | || Sbjct 2205 CCAGCAACACCCATCATATGAAATGGATTTAATGTCCAGTTATGAAAACCTTGGAAAAAT 2146 Query 102217 AGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGT 102276 | | ||| | |||||||||||||||||||| || ||||| ||||||| || || Sbjct 2145 AAAATGAAACGGAATATCGCTGCAACACCAAAACTAGGTGCAAAAAACCAACCAGATTGA 2086 Query 102277 CCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATA 102336 || | || || || | || ||| ||||||| ||| || ||| | || |||||||| Sbjct 2085 CCTAATGGGTAAATTAAGAAAACAGAAACAAAAAGAGCAATTGGCGCTGAAAACGCAATT 2026 Query 102337 GCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCA 102396 || || || ||||||||| | | | | || | || |||||||||||||| |||||| Sbjct 2025 GCGTTATAAGGACGAATTTTTACTGAACGTGCAATTTCAAATTGACGAAGCATAAAACCA 1966 Query 102397 ATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCAC 102456 || || |||| | ||| || || || ||||||||| || || || | ||| ||| Sbjct 1965 ATAAGACCAAACGAACCATGAAGTGCTGTAAAAGCCCAAAGGCCGCCTAATTGACACCAA 1906 Query 102457 CTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAG 102516 | ||||| ||||| ||||||||||||||||| | | | ||||||||||||| Sbjct 1905 CGAGTAAAATCACCTTGTGCTTCAGGACCCCAAAGGAATAATAAAGAATGACCCATACTA 1846 Query 102517 TCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCA 102576 | ||| || || || || || || || | ||||| |||||| ||| || || Sbjct 1845 TTAGCTGGTGTAGAAACTGCCGCAGTTAAAAAATTGCAACCTTC----TAAATATGAGCT 1790 Query 102577 AGC----CCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAAT 102632 ||| || || |||||||| || || |||| || || || |||| ||| | |||| Sbjct 1789 AGCTAATCCATGAGTATACCAAGATGTTACAAATGTAGTTCCTGTAAACCATGCACCAAC 1730 Query 102633 TGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATC 102692 ||| ||||||||||| || ||||| | || |||||||| || || || |||||||| || Sbjct 1729 TGCAAGATAAGCAGTAGGGAAAAGTAATAACCCAGACCACCCTACGAATACAAAGCGGTC 1670 Query 102693 TCGTTTAATCCAGTCATCCAGGATGTCAAACCA 102725 || | ||| || || | ||||||||||| Sbjct 1669 ACGACGTAGCCAATCGTCAACAATGTCAAACCA 1637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633484688023080