Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3544 533 4e-147 >seq3544 Length=2542 Score = 533 bits (590), Expect = 4e-147 Identities = 667/912 (73%), Gaps = 2/912 (0%) Strand=Plus/Minus Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 |||||||| |||||||||| |||||||||||| ||||| || || | || | | | || Sbjct 2542 CCAAGGTTAGCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCT 2483 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||||| |||||||| || || ||||| || ||||| || || | || | Sbjct 2482 ACAACTGATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAA 2423 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| |||||||||| |||||||||||| ||||| | |||||| || | ||| || Sbjct 2422 GCAGTGAACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAG 2363 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || ||||| |||||||||||| || | ||||| || ||||||||||| ||||| || Sbjct 2362 TTGTTAAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATG 2303 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 |||||||| ||||| |||||||| || ||||||||| ||| || | | |||||| Sbjct 2302 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTA 2243 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || |||||||| || || || || || | ||| ||||||||||| || || ||| Sbjct 2242 GTTTCACGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCA 2183 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 |||||||| || || ||||| |||||||| || || |||||||| || || || || || Sbjct 2182 CCAAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCT 2123 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| | ||||| || || || || || || |||||| ||||||||||| Sbjct 2122 TGGAATACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAA 2063 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || || || | || |||| || ||| |||||| ||||| || |||||||| || Sbjct 2062 GAACCTTGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAA 2003 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || || ||| |||||| || | ||| |||| || | |||||||||||| || ||| Sbjct 2002 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCC 1943 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 || ||||| | | || |||| || ||| | ||| | | |||| | ||||| ||||| Sbjct 1942 ATATAAGCGCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTA 1883 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || | |||||| || | || ||||||||||||||||||||||||||| | || || ||| Sbjct 1882 TATAACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCA 1823 Query 22242 TTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCG 22301 || | |||| | || || | || ||||||||||| || || | || || | Sbjct 1822 TTTGAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGAT 1763 Query 22302 ACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAA 22361 || || || ||||| ||||| || || ||||| ||||| ||| ||| | |||||||| Sbjct 1762 ACTGGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAAT 1703 Query 22362 CAAGTTGTAGC-GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAG 22420 ||| || || | || | | | |||||||| | || || ||||| || | || | Sbjct 1702 ACAGTAGTTGCTGTTAATAAAGTA-GGAATCATTAAAACACCAAACCAACCGATGTATAA 1644 Query 22421 ACGGTTATTAGT 22432 |||||| | ||| Sbjct 1643 ACGGTTTTCAGT 1632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146201661060780