Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3544 616 2e-171 seq3157 360 2e-94 seq3158 104 3e-17 >seq3544 Length=2542 Score = 616 bits (682), Expect = 2e-171 Identities = 639/835 (77%), Gaps = 2/835 (0%) Strand=Plus/Minus Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 ||| |||||||||||||| |||||||| || || ||||| |||||||| || | ||||| Sbjct 2486 ATCTACAACTGATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACC 2427 Query 124216 CATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCT 124275 | || || ||||| | |||||||||||| || | |||| |||||||| | | Sbjct 2426 TAAAGCAGTGAACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACG 2367 Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTAC 124335 |||||||| || |||||||| ||||| || | |||||| ||||| ||||| ||||| || Sbjct 2366 AGAGTTGTTAAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAAC 2307 Query 124336 TATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395 |||||||| |||||||||||||| ||||| || |||||| ||| || || | || Sbjct 2306 GATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTC 2247 Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGA 124455 || ||||| | || |||||||| || || | ||||||||||| || || ||||| || Sbjct 2246 AGTAGTTTCACGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGA 2187 Query 124456 TCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTC 124515 || || || | || || || || ||||||||| || ||||| || |||||||| || Sbjct 2186 ACCACCAAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTC 2127 Query 124516 TGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGA 124575 ||||||||| || | ||| || ||||||||||| || ||||| | |||||||||||||| Sbjct 2126 TGCTTGGAATACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGA 2067 Query 124576 GAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGC 124635 || ||||| ||||| | ||||| | | ||||||||| | ||||||| ||| || || Sbjct 2066 AAAAGAACCTTGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGC 2007 Query 124636 TGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCT 124695 ||||||||| ||| ||||||||||||||| ||||| | | | || |||||||||| | Sbjct 2006 TGAATAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACG 1947 Query 124696 TCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACC 124755 ||||| || || ||||||| || | || ||| ||| | || || ||||||||||| Sbjct 1946 ACCCATATAAGCGCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACC 1887 Query 124756 ATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGAT 124815 ||||| |||||||| || | | || |||||||| |||||||||||||| | || || Sbjct 1886 GTTATATAACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAAT 1827 Query 124816 AGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACC 124875 ||| ||||| | |||| || ||||||| || ||||||||||| ||||| |||||||| Sbjct 1826 AGCATTTGAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACC 1767 Query 124876 CGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGAT 124935 | |||||| || | ||| || || ||||| ||||||||||| |||||||| ||| || Sbjct 1766 TGATACTGGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAAT 1707 Query 124936 GAA-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACC 124989 || ||| | | |||||| | ||| |||||||||| ||||||||||||||| Sbjct 1706 AAATACA-GTAGTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACC 1653 >seq3157 Length=2513 Score = 360 bits (398), Expect = 2e-94 Identities = 618/897 (69%), Gaps = 29/897 (3%) Strand=Plus/Minus Query 123017 ATCTCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCTACGATACCTATA 123076 || ||||| ||||| || || ||||| | | || | ||||| ||| || | ||| ||| Sbjct 2505 ATTTCTTGTGATACGAAATCATATGCACGTAAATTTAATGCTAAACCAACTACACCAATA 2446 Query 123077 GATGATGTCCACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTG 123136 | |||| | ||| | || |||||||||||||||| ||||||||| | | ||| Sbjct 2445 GCACTCATCCAAAGACCAGTTACTGGAACGAACAACATAAAGAAGTGTAACCAACGTTTA 2386 Query 123137 TTAGAAAATGCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAA 123196 |||||||| || | |||||| || || ||||| || | || ||||| | | | ||| Sbjct 2385 TTAGAAAAAGCTACACCAAAAATTTGAGACCAAAAACGATTTGCTGTTACAAAAGAATAG 2326 Query 123197 GTTTCTTCTTCCTGTGTAGGATCGAATGCTCTGAAAGTTGTAGATTGAATCTTACCTTCA 123256 ||||||||| | ||||| || | || || | |||||| ||| ||| || Sbjct 2325 GTTTCTTCTGCTTGTGTTGGGTTAAAAGCACGGAAAGTATTAGC---------ACCATCT 2275 Query 123257 GTATATTGTGATGTGTCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACAT 123316 || ||||| | | || || | ||||||||||||||||| ||| | Sbjct 2274 CCAT------------CTTCAAAAAGAGTATTTTCTACTGTTGCACCATGAATTGCAGAA 2227 Query 123317 AGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATG 123376 || | ||| ||||||| | || |||||||||||||| ||||||||||| ||||| | Sbjct 2226 AGAAGTGCGCCACCTAAAACACCAGCAACACCCATCATATGAAATGGATTTAATGTCCAG 2167 Query 123377 TTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGT 123436 || || |||||||| | ||||| || |||| || || ||||| ||||| || ||| Sbjct 2166 TTATGAAAACCTTGGAAAAATAAAATGAAACGGAATATCGCTGCAACACCAAAACTAGGT 2107 Query 123437 GCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCA-GAAA---GATGCTAGTGAAGAC 123492 || || ||||||| ||||||| ||| || || | |||| || | | |||| Sbjct 2106 GCAAAAAACCAACCAGATTGACCTAATGGGTAAATTAAGAAAACAGAAACAAA--AAGA- 2050 Query 123493 TGCGATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGAT 123552 || || || || || || | |||||| ||||| | ||| ||| | ||| || Sbjct 2049 -GCAATTGGCGCTGAAAACGCAATTGCGTTATAAGGACGAATTTTTACTGAACGTGCAAT 1991 Query 123553 CTCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTT 123612 |||||||| | ||||| ||||| || || ||||| ||||| | |||| ||| Sbjct 1990 TTCAAATTGACGAAGCATAAAACCAATAAGACCAAACGAACCATGAAGTGCTGTAAAAGC 1931 Query 123613 CCATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAG 123672 ||| || || || | ||| |||||||| || |||||||||||||| |||||||| Sbjct 1930 CCAAAGGCCGCCTAATTGACACCAACGAGTAAAATCACCTTGTGCTTCAGGACCCCAAAG 1871 Query 123673 GAACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTT 123732 ||| | | | ||||||||| | | | ||||| || ||||| || ||||| || || Sbjct 1870 GAATAATAAAGAATGACCCATACTATTAGCTGGTGTAGAAACTGCCGCAGTTAAAAAATT 1811 Query 123733 TGCTCCCTCAAGATATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGT 123792 || || | |||||| || | ||||| |||||||| ||||| || || ||||| Sbjct 1810 GCAACCTTCTAAATATGAGCTAGCTAATCCATGAGTATACCAAGATGTTACAAATGTAGT 1751 Query 123793 TCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCA 123852 |||| ||||| |||| | || ||||| ||| ||| | |||||| | |||||||| Sbjct 1750 TCCTGTAAACCATGCACCAACTGCAAGATAAGCAGTAGGGAAAAGTAATAACCCAGACCA 1691 Query 123853 TCCTATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAACCAACC 123909 |||| ||||||||| || || | || ||| ||||||| || ||||||||||| Sbjct 1690 CCCTACGAATACAAAGCGGTCACGACGTAGCCAATCGTCAACAATGTCAAACCAACC 1634 >seq3158 Length=11629 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || || |||||||||| || ||||| ||||| Sbjct 142 TTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGTTG 83 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 ||| ||| | |||||| || | || || ||||| | ||||| || || |||||||| Sbjct 82 GTCTTGAGAAGCCATCCAAGCACGAATACCCTCATTTAATAGAATATTTTTAGTATAGAA 23 Query 122986 AGTCTCGAACTCTGGGTCTTCT 123007 ||| || || || || |||||| Sbjct 22 AGTTTCAAATTCAGGATCTTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578971975960520