Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3544 735 0.0 seq3157 500 1e-136 >seq3544 Length=2542 Score = 735 bits (814), Expect = 0.0 Identities = 725/934 (78%), Gaps = 2/934 (0%) Strand=Plus/Minus Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| ||||||||| | || ||| ||||||||||| | |||||||| |||||||| Sbjct 2542 CCAAGGTTAGCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCT 2483 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || ||||||||||| ||||| | || || ||||| || || | ||| | Sbjct 2482 ACAACTGATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAA 2423 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || |||||||| || | ||||| ||||| ||||| | |||||||| || ||||| ||| Sbjct 2422 GCAGTGAACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAG 2363 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 ||||| || |||||||||||||| || ||||||||||||||||| || ||||| |||||| Sbjct 2362 TTGTTAAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATG 2303 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 ||||| || ||||||||||||||||| || |||||| ||| || || ||||||| Sbjct 2302 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTA 2243 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || ||||| | || ||||| || || | || ||||||||||| || | || ||| Sbjct 2242 GTTTCACGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCA 2183 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 || ||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||| Sbjct 2182 CCAAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCT 2123 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||||| |||| | || ||||||||||| ||||| | ||||||| |||| || ||| Sbjct 2122 TGGAATACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAA 2063 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 ||||||||||||| ||| || | | |||||| ||| |||||||| || ||||| ||| Sbjct 2062 GAACCTTGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAA 2003 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 || |||||| |||||| ||||||||||||||||| | || |||||||||||||| ||| Sbjct 2002 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCC 1943 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTA 27444 |||||||| | || ||||| | || ||| | || | | |||| |||||||||||||| Sbjct 1942 ATATAAGCGCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTA 1883 Query 27445 TACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCA 27504 || ||||| || || | ||| || |||||||| |||||||||||||| | ||| || ||| Sbjct 1882 TATAACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCA 1823 Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 |||||| | || | || ||||||| ||| |||||||| || || | | ||||| | Sbjct 1822 TTTGAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGAT 1763 Query 27565 ACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA- 27623 || || ||||| ||||| |||||||| || || ||||| || || || | | ||| || Sbjct 1762 ACTGGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAAT 1703 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 ||| |||||||| ||| | || || ||||| | ||||| |||||||| | || || Sbjct 1702 ACAG-TAGTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAA 1644 Query 27684 ACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||||| | ||| || | ||||||||| ||| Sbjct 1643 ACGGTTTTCAGTGCTAGTAATCCACTCACAAAAA 1610 >seq3157 Length=2513 Score = 500 bits (554), Expect = 1e-136 Identities = 639/880 (73%), Gaps = 0/880 (0%) Strand=Plus/Minus Query 23530 CAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGA 23589 |||||||||| ||||| || |||||||| ||||| | ||| | || | |||| | Sbjct 2513 CAGCACGAATTTCTTGTGATACGAAATCATATGCACGTAAATTTAATGCTAAACCAACTA 2454 Query 23590 TGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACC 23649 ||||||| | | ||||||||| | || ||||| ||||||||||||||||| |||| Sbjct 2453 CACCAATAGCACTCATCCAAAGACCAGTTACTGGAACGAACAACATAAAGAAGTGTAACC 2394 Query 23650 AACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCA 23709 |||| ||||| ||| || || || || ||||| |||||||||||||||||||| || | Sbjct 2393 AACGTTTATTAGAAAAAGCTACACCAAAAATTTGAGACCAAAAACGATTTGCTGTTACAA 2334 Query 23710 TCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTC 23769 |||||||| || || | || || | | || || ||||| || || |||| Sbjct 2333 AAGAATAGGTTTCTTCTGCTTGTGTTGGGTTAAAAGCACGGAAAGTATTAGCACCATCTC 2274 Query 23770 CATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTC 23829 |||||||| | || ||||| || || || | |||||||| ||||| |||||||| || | Sbjct 2273 CATCTTCAAAAAGAGTATTTTCTACTGTTGCACCATGAATTGCAGAAAGAAGTGCGCCAC 2214 Query 23830 CCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCT 23889 | | | ||||||||| ||||||||||| || || || | |||||||||||||| || | Sbjct 2213 CTAAAACACCAGCAACACCCATCATATGAAATGGATTTAATGTCCAGTTATGAAAACCTT 2154 Query 23890 GGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAG 23949 ||| || | || ||| | ||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 2153 GGAAAAATAAAATGAAACGGAATATCGCTGCAACACCAAAACTAGGTGCAAAAAACCAAC 2094 Query 23950 ATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAA 24009 || || || || || || || | ||| ||||| || || | |||||| || | |||| Sbjct 2093 CAGATTGACCTAATGGGTAAATTAAGAAAACAGAAACAAAAAGAGCAATTGGCGCTGAAA 2034 Query 24010 AAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACA 24069 | ||||| || || || ||||| ||| | | |||||| | |||||| ||||| | || Sbjct 2033 ACGCAATTGCGTTATAAGGACGAATTTTTACTGAACGTGCAATTTCAAATTGACGAAGCA 1974 Query 24070 TAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTT 24129 ||||||| ||||| |||| | ||| || || || ||| | |||||| || || | || Sbjct 1973 TAAAACCAATAAGACCAAACGAACCATGAAGTGCTGTAAAAGCCCAAAGGCCGCCTAATT 1914 Query 24130 GGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGAC 24189 | ||| || ||| || ||||| | |||||||||||||| | | | |||||||| Sbjct 1913 GACACCAACGAGTAAAATCACCTTGTGCTTCAGGACCCCAAAGGAATAATAAAGAATGAC 1854 Query 24190 CCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGG 24249 ||||| | ||| || || || || || || || | ||| || ||| || | ||| | Sbjct 1853 CCATACTATTAGCTGGTGTAGAAACTGCCGCAGTTAAAAAATTGCAACCTTCTAAATATG 1794 Query 24250 AACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGC 24309 | ||||| | |||||| || |||||| || ||||| | || || |||| ||| | | Sbjct 1793 AGCTAGCTAATCCATGAGTATACCAAGATGTTACAAATGTAGTTCCTGTAAACCATGCAC 1734 Query 24310 CAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGC 24369 ||| |||||||||||||| || | ||||| | |||||||| || || || ||||||| Sbjct 1733 CAACTGCAAGATAAGCAGTAGGGAAAAGTAATAACCCAGACCACCCTACGAATACAAAGC 1674 Query 24370 GATCCCGTTTAACCCAGTCGTCCAAGATGTCAAACCATCC 24409 | || || | ||| ||||| | ||||||||||| || Sbjct 1673 GGTCACGACGTAGCCAATCGTCAACAATGTCAAACCAACC 1634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665464028499320