Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq947 185 1e-41 seq583 134 2e-26 seq584 109 7e-19 seq186 87.8 2e-12 >seq947 Length=48402 Score = 185 bits (204), Expect = 1e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| ||| | ||||| || || ||||| || ||||| ||||| ||| Sbjct 33721 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCTTCA 33780 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||| || || ||||| |||||||| || || ||| Sbjct 33781 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 33840 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||||| || ||||| || ||||| |||||||||||| Sbjct 33841 CAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGGCTGATTACAAC 33900 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || || || || || Sbjct 33901 ATCCAGAAGGAGTCTACCCTGCATCTGGTGCT 33932 Score = 176 bits (194), Expect = 6e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 || || ||||||||||| ||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 32040 ATACAGATCTTTGTGAAGACCCTGACTGGCAAGACGATCACGCTGGAGGTGGAGTCGTCA 32099 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || ||||| || || ||||| ||||| || || || ||| Sbjct 32100 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 32159 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || ||||| || ||||| || || |||||| Sbjct 32160 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCCGACTACAAC 32219 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | || || ||||| Sbjct 32220 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCTGCGCCTGCGCGGTGG 32266 Score = 165 bits (182), Expect = 1e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| || |||||||| ||| | || || || || ||||| || ||||| ||||| || | Sbjct 33264 TGCAGATTTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 33323 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||| || || || | || ||||||||||| || ||||| ||||| || || || |||| Sbjct 33324 ACACTATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGC 33383 Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042 | || || || ||||| || || ||||| |||||||| || ||||| || || |||||| Sbjct 33384 AGCGCCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGGCCGACTACAACA 33443 Query 172043 TTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || || || || || | || || ||||| Sbjct 33444 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGG 33489 Score = 159 bits (176), Expect = 5e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| ||||||||||| ||||| || || || || ||||| || ||||| ||||| || | Sbjct 31508 TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTGGAGGTGGAGTCCTCGG 31567 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||| ||||| || | || || ||||| || || ||||| ||||| || || || |||| Sbjct 31568 ACACCATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 31627 Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042 | || || || ||||| || || ||||| || || || || ||||| || || |||||| Sbjct 31628 AGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTGGCCGACTACAACA 31687 Query 172043 TTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || || || || || | || || ||||| Sbjct 31688 TCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCGCCTGCGCGGTGG 31733 Score = 96.9 bits (106), Expect = 5e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| || ||||| |||||| | || || || || || || |||||||| |||||||||| Sbjct 32494 TGCAGATTTTTGTCAAAACCTTGACCGGCAAGACAATTACGCTCGAGGTGGAGTCGTCAG 32553 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 |||| || || ||| | |||||||||||||| || ||||| || Sbjct 32554 ACACTATTGAAAACGTAAAAGCCAAGATTCAGGACAAGGAGGG 32596 >seq583 Length=2907 Score = 134 bits (148), Expect = 2e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171907 GAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGC 171966 ||||| |||||||||||||| || || || | || |||||||| || |||||||| ||| Sbjct 2905 GAGGTGGAGTCGTCAGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGC 2846 Query 171967 ATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 | ||| ||||| ||||| || || || || ||||| || ||||| || || || || ||| Sbjct 2845 ACTCCCCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACC 2786 Query 172027 CTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || |||||| | || |||||||| || || ||||| || || Sbjct 2785 CTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCT 2739 Score = 96.9 bits (106), Expect = 5e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| || |||||||| ||||| ||||| || || ||||| || ||||| |||||||| | Sbjct 2518 TGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTGGAGTCGTCGG 2459 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 |||| || || ||| | || ||||||||||| || ||||| || Sbjct 2458 ACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGG 2416 >seq584 Length=13061 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| || ||||| || ||||| || || || || || || || ||||| |||||||||| Sbjct 155 TGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTGGAGGTGGAGTCGTCAG 96 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||| || || || | || || ||||| || || ||||| ||||| || || || |||| Sbjct 95 ACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 36 Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 | || || || || ||||| || ||||| || ||| Sbjct 35 AGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGAT 1 >seq186 Length=14886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 171864 GCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA-- 171921 ||| || ||| | || ||| | | || | || ||||| | || || ||||| || Sbjct 7389 GCAGATATTTTTCAAGACCGTCAGCGGCGAGACAATCACTATTGACGTGGAGTCCTCTTC 7330 Query 171922 -GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||| | || | | | || ||||||||||| || ||||||||||| || | ||| | Sbjct 7329 TGACAGCGTTGAGAGCGTGAAGGCCAAGATTCAGGACAAGGAAGGCATCCCGCACGACGA 7270 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 ||| || || | ||||| || || ||||| || || || | ||||| || || ||||| Sbjct 7269 GCAGCGCCTACTATTTGCGGGCAAGCAGCTGGAGGACGGGCACACCCTGGCCGACTACAA 7210 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCT 172067 | | || |||||||| || || |||| Sbjct 7209 CATACACAAGGAGTCGACGCTTTACCT 7183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657832376804720