Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3544 533 4e-147 >seq3544 Length=2542 Score = 533 bits (590), Expect = 4e-147 Identities = 667/912 (73%), Gaps = 2/912 (0%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | |||||| | || | || ||||| || || | |||||||| | | | || | Sbjct 1632 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTTAATGATTCC-TACTTTATTAAC 1690 Query 41315 -GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 || || ||| |||||||| | ||| ||| ||||| ||||| || || ||||| || Sbjct 1691 AGCAACTACTGTATTTATTATTGGTTTTATTGCTGCACCTCCTGTAGATATTGATGGTAT 1750 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 ||| || || || | || || | || || ||||||||||| || | || || | | Sbjct 1751 CCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACAACATTATTACTGGTGCTATTAT 1810 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | ||||| || || | ||||||||||||||||||||||||||| || | || Sbjct 1811 TCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAATTTGGGAAGCTGCTTCATTAGA 1870 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 |||||| | || ||||| ||||| | |||| | | ||| | ||| || |||| || | Sbjct 1871 CGAATGGTTATATAACGGTGGTCCTTACCAATTAATCGTTTGCCATTTTATCATCGGTAT 1930 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||||| ||||| || |||||||||||| | || |||| ||| | || ||||| Sbjct 1931 TTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGAT 1990 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 | ||| || || || |||||||| || ||||| |||||| ||| || |||| || | Sbjct 1991 CGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTGCTGTATTCGTTATTTACCCTAT 2050 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 || || || ||||||||||||| |||||| || || || || || || ||||| | ||| Sbjct 2051 CGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAATTTCAT 2110 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||||| || || || || || |||||||| || || |||||||| ||||| || Sbjct 2111 GATTGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGC 2170 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853 || ||||||||||| || || ||||||||||| ||| | || || || || || Sbjct 2171 TGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTAGTAACTTCTTCTCT 2230 Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913 |||||||| || |||||| | | || ||| ||||||||| || |||||||| || Sbjct 2231 TATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTGGTTACAAATTCGGTCAAGAAGA 2290 Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 ||| |||||||| || ||||| ||||||||||| || ||||| | || ||||||||||| Sbjct 2291 AGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCGGTCGTTTAATTTTCCAATATGC 2350 Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033 | ||||| || || ||| | || |||||| | ||||| |||||||||||| |||| Sbjct 2351 TTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAGCTGCTTGGCCTGTTGTATGTAT 2410 Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093 |||||| |||| | || | || || ||||| || ||||| || || |||||||| || Sbjct 2411 TTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAACGGCTTCAACTTCAA 2470 Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153 |||||| | ||| | | | || | || || ||||| |||||||||||| ||||||| Sbjct 2471 CCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACACTTGGGCTGACATTATTAACCG 2530 Query 42154 TGCCAACCTTGG 42165 ||| |||||||| Sbjct 2531 TGCTAACCTTGG 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146208060783304