Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3544 572 5e-159 >seq3544 Length=2542 Score = 572 bits (634), Expect = 5e-159 Identities = 696/944 (74%), Gaps = 6/944 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||| ||| | |||||| | || | || |||||| Sbjct 1602 TGGGCTCGTTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 1661 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| | |||||||| | | | | || || || ||| |||||| | | ||| || Sbjct 1662 GGTGTTTTAATGATTCCTACTTTATTAACAGCAACTAC-TGTATTTATTATTGGTTTTAT 1720 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| || ||||| || || || || ||| | | || Sbjct 1721 TGCTGCACCTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATA 1780 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||| || ||||||| | | |||| || || ||||| | || || Sbjct 1781 CGGTAACAACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTT 1840 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | | ||||||||| | || || || || ||||| || Sbjct 1841 CTACCCAATTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCA 1900 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | |||| | ||| || | |||||||| | | |||| |||| || || |||||||| Sbjct 1901 ATTAATCGTTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACT 1960 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 ||| | ||| | || ||| | || |||||| ||| ||||| || || ||||| ||||| Sbjct 1961 TTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGC 2020 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||| || ||| || | || || | || |||||||||||||| ||||| ||||| Sbjct 2021 TGCTCTTGCTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCC 2080 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || ||||| ||||| ||||| |||||| | || ||||| || ||||||||||| || Sbjct 2081 TTTAGGTATTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCT 2140 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| |||||||||||||| || ||||||||||| || || || || || Sbjct 2141 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGC 2200 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||||||||| | |||||||| |||||||||||| Sbjct 2201 TATGCATGGTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGC 2260 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 || ||| ||||| ||||||||||| || || ||||| ||||| |||||||| || || Sbjct 2261 TAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGG 2320 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||||| || || | || ||||||||||| || ||||| || ||| || || ||||| Sbjct 2321 CTACTTCGGTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTT 2380 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 |||| | || |||||||| ||||| | |||||||||||| || | || | ||||| Sbjct 2381 CTTTTTAGCTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTAT 2440 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCAT 43176 ||| |||||||| || || || ||||| ||||||||| |||| ||| ||| || || | Sbjct 2441 GGCATTTAACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGAT--TCACAAGGTCGT 2498 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGG 43220 || || ||||||||||| ||| | || ||||| |||||||| Sbjct 2499 GTAATTAACACTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143526577045748