Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3544 453 3e-123 >seq3544 Length=2542 Score = 453 bits (502), Expect = 3e-123 Identities = 664/934 (71%), Gaps = 4/934 (0%) Strand=Plus/Minus Query 25928 CCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCT 25987 || |||||||| ||||| | | |||||||| || |||| || | |||| Sbjct 2542 CCAAGGTTAGCACGGTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCT 2483 Query 25988 ACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATA 26047 || ||||| ||||| ||||| || || |||| |||||||||||| || | ||||| | | Sbjct 2482 ACAACTGATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAA 2423 Query 26048 GATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTG 26107 | || | ||| || | ||||| ||||||| ||| | |||||| || | ||||| | Sbjct 2422 GCAGTGAACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAG 2363 Query 26108 TTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATA 26167 || |||||| ||||| || |||||||| | || ||||| ||||| || || || || Sbjct 2362 TTGTTAAAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATG 2303 Query 26168 TTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTC 26227 || || || ||||| ||||| || || || || ||| || || | | || || Sbjct 2302 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTA 2243 Query 26228 GTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCA 26287 ||||| |||||| || ||||| || || || |||||||||| || | | ||| Sbjct 2242 GTTTCACGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCA 2183 Query 26288 CCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCT 26347 || || || |||||||||||| ||| |||||||||||||| || || |||||||||||| Sbjct 2182 CCAAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCT 2123 Query 26348 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAA 26407 |||||||| | ||| || || ||||||||||| ||||| | |||||| |||||| |||| Sbjct 2122 TGGAATACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAA 2063 Query 26408 CTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTA 26467 ||||| |||| ||| |||| | ||| || || ||||| || | || || |||| | Sbjct 2062 GAACCTTGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAA 2003 Query 26468 TATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCT 26527 || || ||| ||||| || | ||| |||| | | |||| |||||||||| | || Sbjct 2002 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCC 1943 Query 26528 GCATATGCTGCTACT-CCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATT 26586 ||| || || | | || || | || ||| | | || | ||| || || || || || Sbjct 1942 ATATAAGC-GCAAATACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTT 1884 Query 26587 GTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGC 26646 |||| ||| ||||| | || |||||||||| || ||||| || || | || || || Sbjct 1883 ATATAACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGC 1824 Query 26647 GTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGA 26706 || || | || | | || || | || || ||||| ||||| | ||| || || || Sbjct 1823 ATTTGAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGA 1764 Query 26707 AACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 ||||||||||| || ||||| ||||||||||| ||||| || || || ||| ||||| Sbjct 1763 TACTGGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAA 1704 Query 26767 -ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGA 26825 ||| ||||| |||| | ||| || ||||| | || || ||||| || | || | Sbjct 1703 TACA-GTAGTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATA 1645 Query 26826 GACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||||| ||||| || |||| |||||||||||| Sbjct 1644 AACGGTTTTCAGTGCTAGTAATCCACTCACAAAA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147705595853920