Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3544 549 5e-152 >seq3544 Length=2542 Score = 549 bits (608), Expect = 5e-152 Identities = 677/920 (74%), Gaps = 4/920 (0%) Strand=Plus/Minus Query 40598 GTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTT 40657 ||||| || ||||||||||| ||| || ||| | | ||||| ||||| ||||| Sbjct 2528 GTTAATAATGTCAGCCCAAGTGTTAATTACACGACCTTGTGAATCTACAACTGATTGGTT 2469 Query 40658 AAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATAT 40717 ||||| || || || | |||||| |||||||| || ||||| | | || | ||| || Sbjct 2468 GAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAAT 2409 Query 40718 GCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGC 40777 | | ||| || ||||| | | ||||||||||| | ||| ||||| || ||||| Sbjct 2408 ACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAGTTGTTAAAAGAAGC 2349 Query 40778 ATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCC 40837 |||||| || |||| | ||| ||||| ||||| || || |||||||| ||||| || | Sbjct 2348 ATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATGTTGTAAGTTTCTTC 2289 Query 40838 TTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGAT 40897 ||| ||||| || || || || ||| ||||| |||| || || || ||||| | Sbjct 2288 TTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTAGTTTCACGAATAAG 2229 Query 40898 TGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGC 40957 || ||||| || | || |||||||||| ||| || | ||||||||| || || || Sbjct 2228 AGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCACCAAATACACCAGC 2169 Query 40958 AACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACAT 41017 ||| || ||||| |||||||||||||| || ||||| |||||||||||||| |||| ||| Sbjct 2168 AACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCTTGGAATACAATCAT 2109 Query 41018 GAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAA 41077 ||| ||||| || ||| || |||||||||||||||||||| |||||||| ||||||| Sbjct 2108 GAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAAGAACCTTGACCGAT 2049 Query 41078 TGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATAT 41137 || |||| | ||||||||| ||||| || | | ||||||| || || ||| || Sbjct 2048 AGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAATAAGCTACAGCGAT 1989 Query 41138 CCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTAC 41197 ||| || | |||||||| | | | ||||||||||||| | ||| || || || | Sbjct 1988 CCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCCATATAAGC-GCAAA 1930 Query 41198 T-CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGT 41256 | || || | ||| || | || || | ||| || || || ||||| |||| ||| |||| Sbjct 1929 TACCGATGATAAAATGGCAAACGATTAATTGGTAAGGACCACCGTTATATAACCATTCGT 1870 Query 41257 CCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAA 41316 | | || | |||||||| ||||||||||| || | || || || || || | |||| Sbjct 1869 CTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCATTTGAAGTAGGAA 1810 Query 41317 CGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTA 41376 | ||| |||| ||||| ||||| ||||| | ||| || || || || |||||||| | Sbjct 1809 TAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGATACTGGCTCACGGA 1750 Query 41377 TGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCA 41435 | ||||| ||||||||||| ||||| || ||||| | || || || ||| || || || Sbjct 1749 TACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAATACA-GTAGTTGCT 1691 Query 41436 GTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTG 41495 |||| ||| | |||||||||| |||||||||||||| | ||||| ||||| || ||| Sbjct 1690 GTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAAACGGTTTTCAGTG 1631 Query 41496 CTAGTGACCCAGTTACAAAA 41515 ||||| | ||| | |||||| Sbjct 1630 CTAGTAATCCACTCACAAAA 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143696169692634