Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3544 612 2e-170 seq3157 470 2e-127 seq3412 91.5 2e-13 >seq3544 Length=2542 Score = 612 bits (678), Expect = 2e-170 Identities = 660/870 (76%), Gaps = 8/870 (1%) Strand=Plus/Minus Query 67960 GACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTG 68019 || |||||||||||||| || || | ||| |||||||| || || ||| | |||||| Sbjct 2476 GATTGGTTGAAGTTGAAGCCGTTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTG 2417 Query 68020 AACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTG 68079 ||||| |||| || |||||||| ||||| | |||||||| | ||||| |||||||| Sbjct 2416 AACCAAATACATACAACAGGCCAAGCAGCTAAAAAGAAGTGTAATGAACGAGAGTTGTTA 2357 Query 68080 AACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAA 68139 || || ||||| ||||| || | |||||||||||| || || || ||||| ||||||||| Sbjct 2356 AAAGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCGTGAGCTGCAACGATGTTGTAA 2297 Query 68140 GTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCA 68199 || ||||||||||||||||| ||||||||| ||| || || ||||||| |||||| Sbjct 2296 GTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTAGCAGATTCGTTTTCAGTAGTTTCA 2237 Query 68200 CGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAAT 68259 |||| || |||||||| || | ||||||||||| ||| || | || ||||||||| Sbjct 2236 CGAATAAGAGAAGAAGTTACTAATGAACCATGCATAGCAGAAAATAATGAACCACCAAAT 2177 Query 68260 ACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAC 68319 || |||||||| || ||||| ||||| |||||||| |||||||| || ||||||||||| Sbjct 2176 ACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTATGTTCTGCTTGGAAT 2117 Query 68320 ACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCT 68379 || | |||| | ||||||||||||||||| || | |||||| | ||||| || |||||| Sbjct 2116 ACAATCATGAAATTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAAAAAGAACCT 2057 Query 68380 TGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCA 68439 ||||||| ||| || | | ||| || || || || || ||||| || || || || Sbjct 2056 TGACCGATAGGGTAAATAACGAATACAGCAAGAGCAGCAGCTACAGGAGCTGAATAAGCT 1997 Query 68440 ACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTAT 68499 ||| |||||||||||||||||| | ||| | ||||||||||| ||||| ||||| || Sbjct 1996 ACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCACTCACGACCCATATAA 1937 Query 68500 GCAAAGATACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCATTGTAC 68556 || | ||||| || | || || || ||||| |||| |||||||||| || || Sbjct 1936 GCGCAAATACCGATGATAAAATGGCAAACGATTAA---TTGGTAAGGACCACCGTTATAT 1880 Query 68557 AACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTT 68616 ||||| || || | | || ||||||||||| || || ||||| | |||||| |||||| Sbjct 1879 AACCATTCGTCTAATGAAGCAGCTTCCCAAATTGGGTAGAAGTGCATACCAATAGCATTT 1820 Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676 ||| |||||| || |||||||| ||| ||||||||||| || | | ||||| | || Sbjct 1819 GAAGTAGGAATAATAGCACCAGTAATAATGTTGTTACCGTATAATAAAGAACCTGATACT 1760 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 || ||||| |||||||| || || ||||| || ||||| || || | | || || ||| Sbjct 1759 GGCTCACGGATACCATCAATATCTACAGGAGGTGCAGCAATAAAACCAATAATAAATACA 1700 Query 68736 GATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCG 68795 | | ||||||| | | ||||| ||||| | || || |||||||| | ||| | || Sbjct 1699 G-TAGTTGCTGTTAATAAAGTAGGAATCATTAAAACACCAAACCAACCGATGTATAAACG 1641 Query 68796 GTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||| || ||| ||| | ||| || || || Sbjct 1640 GTTTTCAGTGCTAGTAATCCACTCACAAAA 1611 >seq3157 Length=2513 Score = 470 bits (520), Expect = 2e-127 Identities = 635/881 (72%), Gaps = 8/881 (1%) Strand=Plus/Minus Query 66738 ATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATG 66797 || ||||| ||||| || ||||| ||||| | || | || | ||||| | ||| || Sbjct 2505 ATTTCTTGTGATACGAAATCATATGCACGTAAATTTAATGCTAAACCAACTACACCAATA 2446 Query 66798 GAACTTGTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTA 66857 | ||| |||||||||| | || ||||| |||||||||||||| || ||||| | ||| Sbjct 2445 GCACTCATCCAAAGACCAGTTACTGGAACGAACAACATAAAGAAGTGTAACCAACGTTTA 2386 Query 66858 TTGCTAAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAA 66917 || ||| || | |||||| || |||||||| || || ||||| || || | || || Sbjct 2385 TTAGAAAAAGCTACACCAAAAATTTGAGACCAAAAACGATTTGCTGTTACAAAAGAATAG 2326 Query 66918 GTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCA 66977 |||||||| |||| || | || || || |||||| || || || ||||||||| Sbjct 2325 GTTTCTTCTGCTTGTGTTGGGTTAAAAGCACGGAAAGTATTAGCACCATCTCCATCTTCA 2266 Query 66978 TACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATA 67037 | |||||||| |||||||| |||||||||| |||||||| | ||| ||||| | | | Sbjct 2265 AAAAGAGTATTTTCTACTGTTGCACCATGAATTGCAGAAAGAAGTGCGCCACCTAAAACA 2206 Query 67038 CCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAG 67097 || || ||||||||||||||||| || || || ||||||||||| || ||||| | || Sbjct 2205 CCAGCAACACCCATCATATGAAATGGATTTAATGTCCAGTTATGAAAACCTTGGAAAAAT 2146 Query 67098 AGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGA 67157 | || ||| || || || |||| || || ||| || || |||||||||| |||||| Sbjct 2145 AAAATGAAACGGAATATCGCTGCAACACCAAAACTAGGTGCAAAAAACCAACCAGATTGA 2086 Query 67158 CCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATA 67217 || | ||||| || | || ||| |||||||| ||| || || | || |||||||| Sbjct 2085 CCTAATGGGTAAATTAAGAAAACAGAAACAAAAAGAGCAATTGGCGCTGAAAACGCAATT 2026 Query 67218 GCATTGTAGGGACGGATACCGA-TGAGACGTGCCAGTTCAAACTGGCGAAGCATGAAACC 67276 || || || ||||| || | ||| |||||| | |||||| || |||||||| ||||| Sbjct 2025 GCGTTATAAGGACGAATTTTTACTGA-ACGTGCAATTTCAAATTGACGAAGCATAAAACC 1967 Query 67277 AATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCA 67336 ||| ||| | || | || || || || |||| ||| || || || | ||| ||| Sbjct 1966 AATAAGACCAAACGAACCATGAAGTGCTGTAAAAGCCCAAAGGCCGCCTAATTGACACCA 1907 Query 67337 GCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGC 67396 || ||||| || || | |||||||||||||| | | | ||||||||||||| Sbjct 1906 ACGAGTAAAATCACCTTGTGCTTCAGGACCCCAAAGGAATAATAAAGAATGACCCATACT 1847 Query 67397 ATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTAGCACCCTCAAGAT---AACTAGA 67453 || ||| || || || || ||||| || | |||||| ||| || | || | ||| Sbjct 1846 ATTAGCTGGTGTAGAAACTGCCGCAGTTAAAAAATTGCAACCTTCTAAATATGAGCTA-- 1789 Query 67454 CGCGAGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAAT 67513 || | ||| ||||| ||||| ||| ||||| ||||| || |||| ||| |||||| Sbjct 1788 -GCTAATCCATGAGTATACCAAGATGTTACAAATGTAGTTCCTGTAAACCATGCACCAAC 1730 Query 67514 TGCCATATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATC 67573 ||| | ||||||||| || ||||| | || |||||||| || || || |||||||| || Sbjct 1729 TGCAAGATAAGCAGTAGGGAAAAGTAATAACCCAGACCACCCTACGAATACAAAGCGGTC 1670 Query 67574 TCGTTTAAGCCAGTCATCAAGGACATCGAACCACCCCCGTT 67614 || ||||| || |||| | || ||||| || |||| Sbjct 1669 ACGACGTAGCCAATCGTCAACAATGTCAAACCAACCGCGTT 1629 >seq3412 Length=9231 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||| ||||||||| ||||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 161 CTCCTCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 220 Query 35571 AGCTACTGAGGAT 35583 ||||||| ||||| Sbjct 221 AGCTACTAAGGAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572028292867320