Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parachlorella_20kessleri_20[genbank_20GCA_5F001598975.1_202015-12- 19] 3,651 sequences; 59,187,803 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3544 672 0.0 seq3157 432 4e-116 >seq3544 Length=2542 Score = 672 bits (744), Expect = 0.0 Identities = 711/934 (76%), Gaps = 2/934 (0%) Strand=Plus/Plus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||| | ||| || | ||||| | || |||||||||| || || | Sbjct 1610 TTTTTGTGAGTGGATTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTTTT 1669 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 |||||||| ||| | || ||||||| | |||| || || | | || | ||||| | Sbjct 1670 AATGATTCCTACTTTATTAACAGCAACTA-CTGTATTTATTATTGGTTTTATTGCTGCAC 1728 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | ||||| || || || || |||||||| || || | ||||| | | || ||||||| Sbjct 1729 CTCCTGTAGATATTGATGGTATCCGTGAGCCAGTATCAGGTTCTTTATTATACGGTAACA 1788 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||| || ||||||| || | || |||| || || |||||| | |||||||| || | Sbjct 1789 ACATTATTACTGGTGCTATTATTCCTACTTCAAATGCTATTGGTATGCACTTCTACCCAA 1848 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || ||| | || || ||| | |||||||||||||||| |||| | | | Sbjct 1849 TTTGGGAAGCTGCTTCATTAGACGAATGGTTATATAACGGTGGTCCTTACCAATTAATCG 1908 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | || || |||| ||||| | || || ||||| ||||||||||||||||| | || Sbjct 1909 TTTGCCATTTTATCATCGGTATTTGCGCTTATATGGGTCGTGAGTGGGAACTTTCTTTCC 1968 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 ||||||||||||| || |||||| |||||| ||||| ||||| || ||||| || || Sbjct 1969 GTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTATTCAGCTCCTGTAGCTGCTGCTCTTG 2028 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||||||| | | || ||| |||||||||||||||| || |||| ||||||| | |||| Sbjct 2029 CTGTATTCGTTATTTACCCTATCGGTCAAGGTTCTTTTTCTGATGGTATGCCTTTAGGTA 2088 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 | ||||||||||| || | |||| ||||||||||||||||||| |||||||||||||||| Sbjct 2089 TTTCTGGTACTTTCAATTTCATGATTGTATTCCAAGCAGAACATAACATCCTTATGCACC 2148 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177 | ||||| ||||| ||||||||||| ||||| ||||| || | || ||||||||||| | Sbjct 2149 CATTCCACATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCTATGCATG 2208 Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | | || ||||| || || |||||||||| ||||||| || || ||| | Sbjct 2209 GTTCATTAGTAACTTCTTCTCTTATTCGTGAAACTACTGAAAACGAATCTGCTAACGCTG 2268 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 ||||||| ||||||||||| ||||| || || |||||||| ||||| || |||||||||| Sbjct 2269 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGGCTACTTCG 2328 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 ||||||| || |||||||| ||||| || |||||||| ||||| || |||||||| | | Sbjct 2329 GTCGTTTAATTTTCCAATATGCTTCTTTTAACAACTCTCGTTCATTACACTTCTTTTTAG 2388 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| ||||||||||| | || |||||||| || | || | || || |||||||| | Sbjct 2389 CTGCTTGGCCTGTTGTATGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 2448 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 || | ||||| |||||||||||||| || | | ||| || |||||||| | |||| Sbjct 2449 ACTTAAACGGCTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATTAACA 2508 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGG 158511 | ||||| || | | ||||| ||| ||||| Sbjct 2509 CTTGGGCTGACATTATTAACCGTGCTAACCTTGG 2542 >seq3157 Length=2513 Score = 432 bits (478), Expect = 4e-116 Identities = 621/873 (71%), Gaps = 2/873 (0%) Strand=Plus/Plus Query 159288 GGGTGGTTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 159347 || ||||| ||||| | || || ||||| || || |||||||| || || |||||| Sbjct 1634 GGTTGGTTTGACATTGTTGACGATTGGCTACGTCGTGACCGCTTTGTATTCGTAGGGTGG 1693 Query 159348 TCTGGACTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACA 159407 ||||| || ||||| | || ||||||||||| || |||| | ||| |||| || || Sbjct 1694 TCTGGGTTATTACTTTTCCCTACTGCTTATCTTGCAGTTGGTGCATGGTTTACAGGAACT 1753 Query 159408 GCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAAC 159467 | ||||| || |||||| || || || | ||||| || ||| | || ||| || Sbjct 1754 ACATTTGTAACATCTTGGTATACTCATGGATTAGCTAGCTCATATTTAGAAGGTTGCAAT 1813 Query 159468 TTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT 159527 ||| | || || || || || || || ||| | ||||||||||||| | | | ||| Sbjct 1814 TTTTTAACTGCGGCAGTTTCTACACCAGCTAATAGTATGGGTCATTCTTTATTATTCCTT 1873 Query 159528 TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAAT 159587 ||||||||||| | || || |||| || ||||| ||| | || || | ||| | Sbjct 1874 TGGGGTCCTGAAGCACAAGGTGATTTTACTCGTTGGTGTCAATTAGGCGGCCTTTGGGCT 1933 Query 159588 TTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTG 159647 ||| ||||| || ||| | || | || |||||||| ||||| ||||| |||||| | Sbjct 1934 TTTACAGCACTTCATGGTTCGTTTGGTCTTATTGGTTTTATGCTTCGTCAATTTGAAATT 1993 Query 159648 GCACGTCTCA-TTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGT 159706 |||||| ||| | || |||||||| || || |||||||| || | || |||||| | Sbjct 1994 GCACGT-TCAGTAAAAATTCGTCCTTATAACGCAATTGCGTTTTCAGCGCCAATTGCTCT 2052 Query 159707 TTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTC 159766 |||||| || ||| | || |||||||| ||||| || |||||||||| || || Sbjct 2053 TTTTGTTTCTGTTTTCTTAATTTACCCATTAGGTCAATCTGGTTGGTTTTTTGCACCTAG 2112 Query 159767 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGAC 159826 ||||| || ||||| || || | ||| | || || | ||||| ||||| |||||||| Sbjct 2113 TTTTGGTGTTGCAGCGATATTCCGTTTCATTTTATTTTTCCAAGGTTTTCATAACTGGAC 2172 Query 159827 GTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGC 159886 |||||||| || ||||||||||| ||||||||| | ||||||| ||||| || ||| Sbjct 2173 ATTAAATCCATTTCATATGATGGGTGTTGCTGGTGTTTTAGGTGGCGCACTTCTTTCTGC 2232 Query 159887 CATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTT 159946 || ||||| | || ||||| || || || | |||||||||||| || ||||| || Sbjct 2233 AATTCATGGTGCAACAGTAGAAAATACTCTTTTTGAAGATGGAGATGGTGCTAATACTTT 2292 Query 159947 TAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTT 160006 || ||| | |||| |||| || || || || ||| | || || ||||| || || Sbjct 2293 CCGTGCTTTTAACCCAACACAAGCAGAAGAAACCTATTCTTTTGTAACAGCAAATCGTTT 2352 Query 160007 CTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTT 160066 ||||| || || || ||| | || |||||||| || || ||| | || ||||| ||||| Sbjct 2353 TTGGTCTCAAATTTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGTT 2412 Query 160067 GTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAA 160126 ||| || || || | |||||||||| ||||||| | |||| | || | || Sbjct 2413 GTTCGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTAGTTGGTTTAGCATTAAA 2472 Query 160127 TCTTCGTGCTTACGATTTCGTAAGTCAAGAGAT 160159 | | ||||| || ||||||||| ||||| || Sbjct 2473 TTTACGTGCATATGATTTCGTATCACAAGAAAT 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548349373563320